Gene annotation
Transcriptome id Sobic.001G463000.1
Synonym Sb01g043450
Functional annotation syntaxin 6, N-terminal domain containing protein, expressed
UniProt C5WTQ9
Pfam PF09177
Panther DB PTHR34949 PTHR34949:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G27700 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os03g10920.1 : syntaxin 6, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001112
Brachypodium PNT77940 , KQK23014
Barley HORVU4Hr1G069400.8 , HORVU4Hr1G069400.7 , HORVU4Hr1G069400.6 , HORVU4Hr1G069400.5 , HORVU4Hr1G069400.4 , HORVU4Hr1G069400.3 , HORVU4Hr1G069400.2 , HORVU4Hr1G069400.1
Wheat TraesCS4A02G049700 , TraesCS4D02G254800 , TraesCS4B02G255000
Populus -


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cDNA sequences
Sobic.001G463000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
2 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
3 Sobic.001G541100 signal recognition particle receptor, putative, expressed K13431: signal recognition particle receptor subunit alpha
4 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
5 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
6 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
7 Sobic.003G361500 zinc finger family protein, putative, expressed -
8 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
9 Sobic.002G394400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
11 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
12 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
13 Sobic.003G407200 calmodulin-binding transcription activator, putative, expressed -
14 Sobic.001G031600 calmodulin binding protein, putative, expressed -
15 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
16 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
17 Sobic.002G348600 zinc finger family protein, putative, expressed -
18 Sobic.004G319300 lipase class 3 family protein, putative, expressed -
19 Sobic.009G138200 inactive receptor kinase At1g27190 precursor, putative, expressed -
20 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1


Gene co-expression network
sample Sobic001G463000 Sobic001G463000 Sobic003G119800 Sobic003G119800 Sobic001G463000--Sobic003G119800 Sobic004G031600 Sobic004G031600 Sobic001G463000--Sobic004G031600 Sobic001G541100 Sobic001G541100 Sobic001G463000--Sobic001G541100 Sobic009G219000 Sobic009G219000 Sobic001G463000--Sobic009G219000 Sobic009G138100 Sobic009G138100 Sobic001G463000--Sobic009G138100 Sobic004G274400 Sobic004G274400 Sobic001G463000--Sobic004G274400 Sobic003G361500 Sobic003G361500 Sobic001G463000--Sobic003G361500 Sobic001G516100 Sobic001G516100 Sobic001G463000--Sobic001G516100 Sobic002G394400 Sobic002G394400 Sobic001G463000--Sobic002G394400 Sobic009G134600 Sobic009G134600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic003G119800--Sobic004G031600 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic004G031600--Sobic001G516100 Sobic010G052800 Sobic010G052800 Sobic004G031600--Sobic010G052800 Sobic002G330300 Sobic002G330300 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic003G407200 Sobic003G407200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic004G031600--Sobic001G463000 Sobic001G541100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic001G541100--Sobic001G323000 Sobic009G219900 Sobic009G219900 Sobic001G541100--Sobic009G219900 Sobic001G541100--Sobic009G138100 Sobic006G209400 Sobic006G209400 Sobic001G541100--Sobic006G209400 Sobic001G395400 Sobic001G395400 Sobic001G541100--Sobic001G395400 Sobic010G130000 Sobic010G130000 Sobic001G541100--Sobic010G130000 Sobic001G105500 Sobic001G105500 Sobic001G541100--Sobic001G105500 Sobic002G134600 Sobic002G134600 Sobic001G541100--Sobic002G134600 Sobic009G219000--Sobic001G541100 Sobic009G219000--Sobic001G323000 Sobic001G261456 Sobic001G261456 Sobic009G219000--Sobic001G261456 Sobic008G046500 Sobic008G046500 Sobic009G219000--Sobic008G046500 Sobic001G466700 Sobic001G466700 Sobic009G219000--Sobic001G466700 Sobic009G219000--Sobic004G274400 Sobic009G219000--Sobic009G138100 Sobic009G219000--Sobic001G105500 Sobic001G371200 Sobic001G371200 Sobic009G219000--Sobic001G371200 Sobic010G278200 Sobic010G278200 Sobic009G138100--Sobic010G278200 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic001G124200 Sobic001G124200 Sobic009G138100--Sobic001G124200 Sobic006G033200 Sobic006G033200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G138100--Sobic009G219000 Sobic009G138100--Sobic001G323000 Sobic006G148200 Sobic006G148200 Sobic004G274400--Sobic006G148200 Sobic004G274400--Sobic001G323000 Sobic006G225600 Sobic006G225600 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic004G274400--Sobic009G219000 Sobic002G131900 Sobic002G131900 Sobic004G274400--Sobic002G131900 Sobic003G312200 Sobic003G312200 Sobic004G274400--Sobic003G312200 Sobic001G206900 Sobic001G206900 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic008G046600 Sobic008G046600 Sobic003G361500--Sobic008G046600 Sobic006G109300 Sobic006G109300 Sobic003G361500--Sobic006G109300 Sobic001G294700 Sobic001G294700 Sobic003G361500--Sobic001G294700 Sobic004G319300 Sobic004G319300 Sobic003G361500--Sobic004G319300 Sobic009G252800 Sobic009G252800 Sobic003G361500--Sobic009G252800 Sobic004G059000 Sobic004G059000 Sobic003G361500--Sobic004G059000 Sobic007G152101 Sobic007G152101 Sobic003G361500--Sobic007G152101 Sobic008G142700 Sobic008G142700 Sobic003G361500--Sobic008G142700 Sobic006G207500 Sobic006G207500 Sobic003G361500--Sobic006G207500 Sobic001G516100--Sobic004G031600 Sobic001G103200 Sobic001G103200 Sobic001G516100--Sobic001G103200 Sobic003G367300 Sobic003G367300 Sobic001G516100--Sobic003G367300 Sobic004G271700 Sobic004G271700 Sobic001G516100--Sobic004G271700 Sobic001G516100--Sobic002G330300 Sobic002G293300 Sobic002G293300 Sobic001G516100--Sobic002G293300 Sobic001G516100--Sobic001G541100 Sobic001G516100--Sobic003G002400 Sobic001G516100--Sobic004G274400 Sobic001G153200 Sobic001G153200 Sobic002G394400--Sobic001G153200 Sobic001G207700 Sobic001G207700 Sobic002G394400--Sobic001G207700 Sobic002G394400--Sobic001G463000 Sobic003G389700 Sobic003G389700 Sobic002G394400--Sobic003G389700 Sobic001G421300 Sobic001G421300 Sobic002G394400--Sobic001G421300 Sobic001G421900 Sobic001G421900 Sobic002G394400--Sobic001G421900 Sobic002G294500 Sobic002G294500 Sobic002G394400--Sobic002G294500 Sobic002G394400--Sobic001G472600 Sobic003G269200 Sobic003G269200 Sobic002G394400--Sobic003G269200
Octagon: transcription factors


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