Gene annotation
Transcriptome id Sobic.003G407200.1
Synonym Sb03g044220
Functional annotation calmodulin-binding transcription activator, putative, expressed
UniProt C5XGC6
Pfam PF01833 PF00612 PF13637 PF03859
Panther DB PTHR23335 PTHR23335:SF8
NCBI CDD KOG0520; Uncharacterized conserved protein, contains IPT/TIG domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G67310 : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
RAP-DB (Rice) LOC_Os01g69910.1 : calmodulin-binding transcription activator, putative, expressed
MaizeGDB (Corn) Zm00025a026239
Brachypodium KQK11274 , KQK11275 , KQK11272 , KQK11273
Barley HORVU3Hr1G094860.2 , HORVU3Hr1G094860.3 , HORVU3Hr1G094860.1 , HORVU3Hr1G094860.6 , HORVU3Hr1G094860.7 , HORVU3Hr1G094860.4 , HORVU3Hr1G094860.5 , HORVU3Hr1G094860.8 , HORVU3Hr1G094860.9
Wheat TraesCS3B02G469100 , TraesCS3B02G469100 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3D02G426700 , TraesCS3A02G433300 , TraesCS3A02G433300 , TraesCS3A02G433300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
2 Sobic.001G162100 WRKY94, expressed -
3 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
4 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
5 Sobic.001G516100 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
6 Sobic.003G272400 DUF292 domain containing protein, expressed -
7 Sobic.010G068500 cyclic nucleotide-gated ion channel 14, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
9 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
10 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
11 Sobic.002G076866 - -
12 Sobic.003G367300 actin, putative, expressed K10355: actin, other eukaryote
13 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
14 Sobic.004G353600 sucrose transporters(PubMedID : 23805151)@Sucrose transporter genes(PubMedID : 24456189)@Sugar transporter(PubMedID : 27330561)@transporter, major facilitator family, putative, expressed K15378: solute carrier family 45, member 1/2/4
15 Sobic.001G463000 syntaxin 6, N-terminal domain containing protein, expressed -
16 Sobic.006G225600 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
18 Sobic.003G281900 regulator of chromosome condensation, putative, expressed -
19 Sobic.003G052400 proline-rich family protein, putative, expressed -
20 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic003G407200 Sobic003G407200 Sobic004G031600 Sobic004G031600 Sobic003G407200--Sobic004G031600 Sobic001G162100 Sobic001G162100 Sobic003G407200--Sobic001G162100 Sobic002G306000 Sobic002G306000 Sobic003G407200--Sobic002G306000 Sobic008G016900 Sobic008G016900 Sobic003G407200--Sobic008G016900 Sobic001G516100 Sobic001G516100 Sobic003G407200--Sobic001G516100 Sobic003G272400 Sobic003G272400 Sobic003G407200--Sobic003G272400 Sobic010G068500 Sobic010G068500 Sobic003G407200--Sobic010G068500 Sobic007G178200 Sobic007G178200 Sobic003G407200--Sobic007G178200 Sobic009G134600 Sobic009G134600 Sobic003G407200--Sobic009G134600 Sobic004G031600--Sobic001G516100 Sobic010G052800 Sobic010G052800 Sobic004G031600--Sobic010G052800 Sobic002G330300 Sobic002G330300 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic003G119800 Sobic003G119800 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic001G463000 Sobic001G463000 Sobic004G031600--Sobic001G463000 Sobic006G225600 Sobic006G225600 Sobic001G162100--Sobic006G225600 Sobic004G234900 Sobic004G234900 Sobic001G162100--Sobic004G234900 Sobic009G059700 Sobic009G059700 Sobic001G162100--Sobic009G059700 Sobic001G162100--Sobic008G016900 Sobic010G062800 Sobic010G062800 Sobic001G162100--Sobic010G062800 Sobic002G122700 Sobic002G122700 Sobic001G162100--Sobic002G122700 Sobic001G434900 Sobic001G434900 Sobic001G162100--Sobic001G434900 Sobic001G098200 Sobic001G098200 Sobic001G162100--Sobic001G098200 Sobic009G219900 Sobic009G219900 Sobic001G162100--Sobic009G219900 Sobic004G353600 Sobic004G353600 Sobic002G306000--Sobic004G353600 Sobic002G306000--Sobic003G272400 Sobic003G281900 Sobic003G281900 Sobic002G306000--Sobic003G281900 Sobic002G306000--Sobic003G407200 Sobic007G196900 Sobic007G196900 Sobic002G306000--Sobic007G196900 Sobic010G140500 Sobic010G140500 Sobic002G306000--Sobic010G140500 Sobic001G015800 Sobic001G015800 Sobic002G306000--Sobic001G015800 Sobic001G096000 Sobic001G096000 Sobic002G306000--Sobic001G096000 Sobic009G219000 Sobic009G219000 Sobic002G306000--Sobic009G219000 Sobic008G016900--Sobic002G330300 Sobic002G379400 Sobic002G379400 Sobic008G016900--Sobic002G379400 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic007G188100 Sobic007G188100 Sobic008G016900--Sobic007G188100 Sobic004G145200 Sobic004G145200 Sobic008G016900--Sobic004G145200 Sobic008G016900--Sobic001G162100 Sobic008G016900--Sobic009G059700 Sobic002G343500 Sobic002G343500 Sobic008G016900--Sobic002G343500 Sobic001G516100--Sobic004G031600 Sobic001G103200 Sobic001G103200 Sobic001G516100--Sobic001G103200 Sobic003G367300 Sobic003G367300 Sobic001G516100--Sobic003G367300 Sobic004G271700 Sobic004G271700 Sobic001G516100--Sobic004G271700 Sobic001G516100--Sobic002G330300 Sobic002G293300 Sobic002G293300 Sobic001G516100--Sobic002G293300 Sobic001G541100 Sobic001G541100 Sobic001G516100--Sobic001G541100 Sobic003G002400 Sobic003G002400 Sobic001G516100--Sobic003G002400 Sobic004G274400 Sobic004G274400 Sobic001G516100--Sobic004G274400 Sobic003G272400--Sobic004G353600 Sobic003G272400--Sobic003G281900 Sobic003G252400 Sobic003G252400 Sobic003G272400--Sobic003G252400 Sobic003G272400--Sobic002G306000 Sobic010G260300 Sobic010G260300 Sobic003G272400--Sobic010G260300 Sobic003G126300 Sobic003G126300 Sobic003G272400--Sobic003G126300 Sobic006G207900 Sobic006G207900 Sobic003G272400--Sobic006G207900 Sobic001G110900 Sobic001G110900 Sobic003G272400--Sobic001G110900 Sobic004G309600 Sobic004G309600 Sobic003G272400--Sobic004G309600 Sobic010G068500--Sobic009G219000 Sobic006G119800 Sobic006G119800 Sobic010G068500--Sobic006G119800 Sobic002G134600 Sobic002G134600 Sobic010G068500--Sobic002G134600 Sobic003G309200 Sobic003G309200 Sobic010G068500--Sobic003G309200 Sobic003G010400 Sobic003G010400 Sobic010G068500--Sobic003G010400 Sobic010G068500--Sobic006G225600 Sobic010G068500--Sobic001G162100 Sobic001G425800 Sobic001G425800 Sobic010G068500--Sobic001G425800 Sobic010G068500--Sobic001G516100 Sobic003G392200 Sobic003G392200 Sobic007G178200--Sobic003G392200 Sobic001G416600 Sobic001G416600 Sobic007G178200--Sobic001G416600 Sobic004G025000 Sobic004G025000 Sobic007G178200--Sobic004G025000 Sobic007G178200--Sobic008G016900 Sobic003G361300 Sobic003G361300 Sobic007G178200--Sobic003G361300 Sobic007G178200--Sobic009G134600 Sobic004G245900 Sobic004G245900 Sobic007G178200--Sobic004G245900 Sobic007G178200--Sobic002G330300 Sobic010G071700 Sobic010G071700 Sobic007G178200--Sobic010G071700 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G230700 Sobic009G230700 Sobic009G134600--Sobic009G230700 Sobic009G134600--Sobic007G178200 Sobic009G134600--Sobic009G059700 Sobic003G056500 Sobic003G056500 Sobic009G134600--Sobic003G056500 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic009G134600--Sobic004G031600
Octagon: transcription factors


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