Gene annotation
Transcriptome id Sobic.003G411900.2,Sobic.003G411900.1
Synonym HSS,auxin response factor, SbARF6, SbARF6;auxin response factor, ARF2, ARF1-BP, Sb03g044630, ORE14
Functional annotation auxin response factor 2 (PubMedID : 26465154)
auxin response factor 2 (PubMedID : 26465154)
"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
"OsARF4(Ortholog in rice:Hu et al., 2018)" (PubMedID : 31659874)
Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32 (PubMedID : 28624908)
auxin response factor, putative, expressed
UniProt C5XH00 , A0A109NDJ0 , A0A1B6Q7Z0
Pfam PF02309 PF02362 PF06507 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone GO:0003677DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G62000 : auxin response factor 2
RAP-DB (Rice) LOC_Os01g70270.2,LOC_Os01g70270.3 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a039226 , Zm00025a054125 , Zm00025a026191
Brachypodium KQK11324
Barley HORVU3Hr1G096510.12 , HORVU3Hr1G096510.13 , HORVU3Hr1G096510.11 , HORVU3Hr1G096510.14 , HORVU3Hr1G096510.15 , HORVU3Hr1G097200.9 , HORVU3Hr1G097200.8 , HORVU3Hr1G097200.7 , HORVU3Hr1G097200.6 , HORVU3Hr1G097200.4 , HORVU3Hr1G097200.3 , HORVU3Hr1G097200.2 , HORVU3Hr1G097200.1 , HORVU3Hr1G097200.14 , HORVU3Hr1G097200.13 , HORVU3Hr1G097200.12 , HORVU3Hr1G097200.11 , HORVU3Hr1G097200.10 , HORVU1Hr1G087460.8 , HORVU1Hr1G087460.9 , HORVU1Hr1G087460.4 , HORVU1Hr1G087460.5 , HORVU1Hr1G087460.6 , HORVU1Hr1G087460.7 , HORVU1Hr1G087460.1 , HORVU3Hr1G096410.1 , HORVU3Hr1G096410.3 , HORVU3Hr1G096410.2 , HORVU3Hr1G096410.4 , HORVU1Hr1G087460.18 , HORVU1Hr1G087460.19 , HORVU1Hr1G087460.16 , HORVU1Hr1G087460.17 , HORVU1Hr1G087460.14 , HORVU1Hr1G087460.15 , HORVU1Hr1G087460.12 , HORVU1Hr1G087460.13 , HORVU1Hr1G087460.10 , HORVU1Hr1G087460.11 , HORVU1Hr1G087460.27 , HORVU1Hr1G087460.25 , HORVU1Hr1G087460.22 , HORVU1Hr1G087460.20 , HORVU1Hr1G087460.29 , HORVU1Hr1G087460.28 , HORVU3Hr1G097200.5 , HORVU1Hr1G087460.31 , HORVU1Hr1G087460.32 , HORVU1Hr1G087460.33 , HORVU3Hr1G096510.2 , HORVU3Hr1G096510.3 , HORVU3Hr1G096510.5 , HORVU3Hr1G096510.8 , HORVU3Hr1G096510.9
Wheat TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3D02G442000 , TraesCS3B02G486000 , TraesCS3B02G486000 , TraesCS3A02G449300 , TraesCS3A02G449300 , TraesCS3A02G449300 , TraesCS3B02G475800 , TraesCS3A02G442000 , TraesCS1A02G396400 , TraesCS1B02G424700 , TraesCS3D02G434700
Populus -


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cDNA sequences
Sobic.003G411900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G365900 PWWP domain containing protein, expressed -
2 Sobic.003G029700 CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
4 Sobic.001G122832 - K13414: mitogen-activated protein kinase kinase kinase 1
5 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
6 Sobic.001G205200 expressed protein -
7 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
8 Sobic.003G372500 DUF803 domain containing, putative, expressed -
9 Sobic.001G191600 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
10 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -
11 Sobic.003G313500 MATH domain containing protein, expressed -
12 Sobic.003G372700 expressed protein -
13 Sobic.003G221900 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.003G139900 "Highest expression level in embryo, up-regulation in roots in response to exogenous ABA and PEG"(PubMedID : 27501690)@OsSPL1 - SBP-box gene family member, expressed -
15 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
16 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
17 Sobic.001G318432 - -
18 Sobic.004G205800 cyclin-dependent kinase G-1, putative, expressed K08818: cell division cycle 2-like
19 Sobic.002G411600 CW-type Zinc Finger, putative, expressed -
20 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G411900 Sobic003G411900 Sobic001G365900 Sobic001G365900 Sobic003G411900--Sobic001G365900 Sobic003G029700 Sobic003G029700 Sobic003G411900--Sobic003G029700 Sobic007G207000 Sobic007G207000 Sobic003G411900--Sobic007G207000 Sobic001G122832 Sobic001G122832 Sobic003G411900--Sobic001G122832 Sobic001G125200 Sobic001G125200 Sobic003G411900--Sobic001G125200 Sobic001G205200 Sobic001G205200 Sobic003G411900--Sobic001G205200 Sobic009G026500 Sobic009G026500 Sobic003G411900--Sobic009G026500 Sobic003G372500 Sobic003G372500 Sobic003G411900--Sobic003G372500 Sobic001G191600 Sobic001G191600 Sobic003G411900--Sobic001G191600 Sobic010G206900 Sobic010G206900 Sobic001G365900--Sobic010G206900 Sobic001G534700 Sobic001G534700 Sobic001G365900--Sobic001G534700 Sobic001G289600 Sobic001G289600 Sobic001G365900--Sobic001G289600 Sobic008G130100 Sobic008G130100 Sobic001G365900--Sobic008G130100 Sobic002G411600 Sobic002G411600 Sobic001G365900--Sobic002G411600 Sobic002G008900 Sobic002G008900 Sobic001G365900--Sobic002G008900 Sobic009G191000 Sobic009G191000 Sobic001G365900--Sobic009G191000 Sobic004G034900 Sobic004G034900 Sobic001G365900--Sobic004G034900 Sobic001G540400 Sobic001G540400 Sobic001G365900--Sobic001G540400 Sobic004G341900 Sobic004G341900 Sobic003G029700--Sobic004G341900 Sobic001G214300 Sobic001G214300 Sobic003G029700--Sobic001G214300 Sobic010G013800 Sobic010G013800 Sobic003G029700--Sobic010G013800 Sobic008G047800 Sobic008G047800 Sobic003G029700--Sobic008G047800 Sobic001G497300 Sobic001G497300 Sobic003G029700--Sobic001G497300 Sobic002G006900 Sobic002G006900 Sobic003G029700--Sobic002G006900 Sobic003G029700--Sobic009G026500 Sobic003G029700--Sobic009G191000 Sobic003G029700--Sobic001G205200 Sobic007G207000--Sobic001G125200 Sobic001G474600 Sobic001G474600 Sobic007G207000--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic007G207000--Sobic003G101400 Sobic007G207000--Sobic009G191000 Sobic001G196500 Sobic001G196500 Sobic007G207000--Sobic001G196500 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic002G309600 Sobic002G309600 Sobic007G207000--Sobic002G309600 Sobic001G050200 Sobic001G050200 Sobic007G207000--Sobic001G050200 Sobic003G221900 Sobic003G221900 Sobic001G122832--Sobic003G221900 Sobic001G332500 Sobic001G332500 Sobic001G122832--Sobic001G332500 Sobic005G027400 Sobic005G027400 Sobic001G122832--Sobic005G027400 Sobic001G122832--Sobic003G029700 Sobic001G122832--Sobic003G411900 Sobic003G316500 Sobic003G316500 Sobic001G122832--Sobic003G316500 Sobic010G223700 Sobic010G223700 Sobic001G122832--Sobic010G223700 Sobic002G294800 Sobic002G294800 Sobic001G122832--Sobic002G294800 Sobic002G211800 Sobic002G211800 Sobic001G122832--Sobic002G211800 Sobic001G125200--Sobic001G474600 Sobic003G056100 Sobic003G056100 Sobic001G125200--Sobic003G056100 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic001G125200--Sobic009G026500 Sobic009G166300 Sobic009G166300 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic001G125200--Sobic002G006900 Sobic007G217000 Sobic007G217000 Sobic001G125200--Sobic007G217000 Sobic006G048500 Sobic006G048500 Sobic001G205200--Sobic006G048500 Sobic001G205200--Sobic002G006900 Sobic003G372700 Sobic003G372700 Sobic001G205200--Sobic003G372700 Sobic002G297200 Sobic002G297200 Sobic001G205200--Sobic002G297200 Sobic004G007100 Sobic004G007100 Sobic001G205200--Sobic004G007100 Sobic001G205200--Sobic002G309600 Sobic003G087400 Sobic003G087400 Sobic001G205200--Sobic003G087400 Sobic007G167500 Sobic007G167500 Sobic001G205200--Sobic007G167500 Sobic001G205200--Sobic003G029700 Sobic009G026500--Sobic001G365900 Sobic007G126600 Sobic007G126600 Sobic009G026500--Sobic007G126600 Sobic008G192600 Sobic008G192600 Sobic009G026500--Sobic008G192600 Sobic009G026500--Sobic001G214300 Sobic010G153700 Sobic010G153700 Sobic009G026500--Sobic010G153700 Sobic009G026500--Sobic003G372700 Sobic001G290100 Sobic001G290100 Sobic009G026500--Sobic001G290100 Sobic009G026500--Sobic002G006900 Sobic009G026500--Sobic002G008900 Sobic007G075400 Sobic007G075400 Sobic003G372500--Sobic007G075400 Sobic010G147100 Sobic010G147100 Sobic003G372500--Sobic010G147100 Sobic003G372500--Sobic003G316500 Sobic003G372500--Sobic001G050200 Sobic003G372500--Sobic009G191000 Sobic010G227100 Sobic010G227100 Sobic003G372500--Sobic010G227100 Sobic003G372500--Sobic001G534700 Sobic003G313500 Sobic003G313500 Sobic003G372500--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic003G372500--Sobic001G390800 Sobic006G086500 Sobic006G086500 Sobic001G191600--Sobic006G086500 Sobic001G191600--Sobic003G029700 Sobic006G142775 Sobic006G142775 Sobic001G191600--Sobic006G142775 Sobic004G205800 Sobic004G205800 Sobic001G191600--Sobic004G205800 Sobic001G318432 Sobic001G318432 Sobic001G191600--Sobic001G318432 Sobic001G191600--Sobic001G365900 Sobic001G191600--Sobic002G294800 Sobic010G076300 Sobic010G076300 Sobic001G191600--Sobic010G076300 Sobic002G173000 Sobic002G173000 Sobic001G191600--Sobic002G173000
Octagon: transcription factors


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