Gene annotation
Transcriptome id Sobic.002G387200.3,Sobic.002G387200.2,Sobic.002G387200.1
Synonym serine/arginine-rich (SR) family, SCL33, SR33, ATSCL33, Sb02g040350, sb-SCL25B
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, putative, expressed
UniProt M1H583 , M1GSB8 , C5X386
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF11
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K12900; FUS-interacting serine-arginine-rich protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G13570 : SC35-like splicing factor 30A
RAP-DB (Rice) LOC_Os07g43950.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048870
Brachypodium KQK15056
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G387200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G198150 - -
2 Sobic.003G198200 "similar to Protein phosphatase 2C, expressed in 4 stresses, namely drought, salt, cold and heat"(PubMedID : 29862293)@Negative regulator of ABA(PubMedID : 30367619)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
3 Sobic.001G110900 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
5 Sobic.001G140200 Homeobox domain containing protein, expressed -
6 Sobic.002G079801 - -
7 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.004G337900 ENTH domain containing protein, expressed K12471: epsin
9 Sobic.009G183000 - -
10 Sobic.007G196900 expressed protein -
11 Sobic.001G055900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
12 Sobic.007G037301 - -
13 Sobic.002G306000 calmodulin-binding transcription activator 5, putative, expressed -
14 Sobic.001G184500 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
16 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
17 Sobic.008G044750 - -
18 Sobic.001G045600 remorin, putative, expressed -
19 Sobic.003G060300 endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
20 Sobic.003G361300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@transmembrane amino acid transporter protein, putative, expressed K13946: AUX1, auxin influx carrier (AUX1 LAX family)


Gene co-expression network
sample Sobic002G387200 Sobic002G387200 Sobic003G198150 Sobic003G198150 Sobic002G387200--Sobic003G198150 Sobic003G198200 Sobic003G198200 Sobic002G387200--Sobic003G198200 Sobic001G110900 Sobic001G110900 Sobic002G387200--Sobic001G110900 Sobic002G110300 Sobic002G110300 Sobic002G387200--Sobic002G110300 Sobic001G140200 Sobic001G140200 Sobic002G387200--Sobic001G140200 Sobic002G079801 Sobic002G079801 Sobic002G387200--Sobic002G079801 Sobic003G374500 Sobic003G374500 Sobic002G387200--Sobic003G374500 Sobic004G337900 Sobic004G337900 Sobic002G387200--Sobic004G337900 Sobic009G183000 Sobic009G183000 Sobic002G387200--Sobic009G183000 Sobic008G044750 Sobic008G044750 Sobic003G198150--Sobic008G044750 Sobic003G198150--Sobic003G198200 Sobic009G128300 Sobic009G128300 Sobic003G198150--Sobic009G128300 Sobic001G509400 Sobic001G509400 Sobic003G198150--Sobic001G509400 Sobic003G079800 Sobic003G079800 Sobic003G198150--Sobic003G079800 Sobic003G227600 Sobic003G227600 Sobic003G198150--Sobic003G227600 Sobic004G170032 Sobic004G170032 Sobic003G198150--Sobic004G170032 Sobic003G233900 Sobic003G233900 Sobic003G198150--Sobic003G233900 Sobic001G450800 Sobic001G450800 Sobic003G198150--Sobic001G450800 Sobic003G198200--Sobic003G198150 Sobic003G198200--Sobic004G170032 Sobic003G198200--Sobic001G450800 Sobic002G148700 Sobic002G148700 Sobic003G198200--Sobic002G148700 Sobic003G198200--Sobic003G227600 Sobic003G198200--Sobic004G337900 Sobic008G029300 Sobic008G029300 Sobic003G198200--Sobic008G029300 Sobic004G353600 Sobic004G353600 Sobic003G198200--Sobic004G353600 Sobic003G198200--Sobic002G387200 Sobic006G220300 Sobic006G220300 Sobic001G110900--Sobic006G220300 Sobic003G272400 Sobic003G272400 Sobic001G110900--Sobic003G272400 Sobic001G110900--Sobic001G140200 Sobic001G110900--Sobic003G198150 Sobic010G233450 Sobic010G233450 Sobic001G110900--Sobic010G233450 Sobic002G110200 Sobic002G110200 Sobic001G110900--Sobic002G110200 Sobic001G110900--Sobic001G509400 Sobic002G013900 Sobic002G013900 Sobic001G110900--Sobic002G013900 Sobic005G209500 Sobic005G209500 Sobic001G110900--Sobic005G209500 Sobic007G037301 Sobic007G037301 Sobic002G110300--Sobic007G037301 Sobic001G095500 Sobic001G095500 Sobic002G110300--Sobic001G095500 Sobic002G110300--Sobic009G183000 Sobic010G089100 Sobic010G089100 Sobic002G110300--Sobic010G089100 Sobic001G083800 Sobic001G083800 Sobic002G110300--Sobic001G083800 Sobic004G226600 Sobic004G226600 Sobic002G110300--Sobic004G226600 Sobic003G119800 Sobic003G119800 Sobic002G110300--Sobic003G119800 Sobic007G006900 Sobic007G006900 Sobic002G110300--Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic002G110300--Sobic002G134600 Sobic010G054500 Sobic010G054500 Sobic001G140200--Sobic010G054500 Sobic008G052500 Sobic008G052500 Sobic001G140200--Sobic008G052500 Sobic001G140200--Sobic001G509400 Sobic001G140200--Sobic008G044750 Sobic008G065400 Sobic008G065400 Sobic001G140200--Sobic008G065400 Sobic002G325600 Sobic002G325600 Sobic001G140200--Sobic002G325600 Sobic001G075101 Sobic001G075101 Sobic001G140200--Sobic001G075101 Sobic007G169600 Sobic007G169600 Sobic001G140200--Sobic007G169600 Sobic005G079700 Sobic005G079700 Sobic001G140200--Sobic005G079700 Sobic002G079801--Sobic003G079800 Sobic002G079801--Sobic008G044750 Sobic001G184500 Sobic001G184500 Sobic002G079801--Sobic001G184500 Sobic002G079801--Sobic003G198150 Sobic002G079801--Sobic009G183000 Sobic002G079801--Sobic001G140200 Sobic002G079801--Sobic009G128300 Sobic010G101700 Sobic010G101700 Sobic002G079801--Sobic010G101700 Sobic002G079801--Sobic001G509400 Sobic003G374500--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic003G374500--Sobic001G278600 Sobic003G366850 Sobic003G366850 Sobic003G374500--Sobic003G366850 Sobic003G374500--Sobic007G037301 Sobic003G374500--Sobic005G079700 Sobic003G374500--Sobic001G140200 Sobic001G262900 Sobic001G262900 Sobic003G374500--Sobic001G262900 Sobic003G266700 Sobic003G266700 Sobic003G374500--Sobic003G266700 Sobic002G431200 Sobic002G431200 Sobic003G374500--Sobic002G431200 Sobic003G353400 Sobic003G353400 Sobic004G337900--Sobic003G353400 Sobic004G337900--Sobic001G450800 Sobic003G361300 Sobic003G361300 Sobic004G337900--Sobic003G361300 Sobic003G278700 Sobic003G278700 Sobic004G337900--Sobic003G278700 Sobic004G337900--Sobic003G198200 Sobic004G337900--Sobic003G198150 Sobic001G157400 Sobic001G157400 Sobic004G337900--Sobic001G157400 Sobic009G229300 Sobic009G229300 Sobic004G337900--Sobic009G229300 Sobic009G099000 Sobic009G099000 Sobic004G337900--Sobic009G099000 Sobic010G260300 Sobic010G260300 Sobic009G183000--Sobic010G260300 Sobic009G183000--Sobic002G079801 Sobic009G183000--Sobic003G198150 Sobic009G183000--Sobic002G110300 Sobic009G183000--Sobic008G044750 Sobic009G183000--Sobic009G128300 Sobic008G031300 Sobic008G031300 Sobic009G183000--Sobic008G031300 Sobic009G183000--Sobic001G095500 Sobic007G025800 Sobic007G025800 Sobic009G183000--Sobic007G025800
Octagon: transcription factors


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