Gene annotation
Transcriptome id Sobic.009G099200.2,Sobic.009G099200.1
Synonym Sb09g015260
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A1Z5R1W7 , C5YW66
Pfam PF03127 PF00790 PF03127
Panther DB PTHR13856 PTHR13856:SF75
NCBI CDD KOG1087; Cytosolic sorting protein GGA2/TOM1
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT2G38410 : ENTH/VHS/GAT family protein
RAP-DB (Rice) LOC_Os05g27320.1 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043489
Brachypodium -
Barley HORVU7Hr1G025620.10 , HORVU7Hr1G025620.11 , HORVU7Hr1G025620.4 , HORVU7Hr1G025620.5 , HORVU7Hr1G025620.6 , HORVU7Hr1G025620.7 , HORVU7Hr1G025620.1 , HORVU7Hr1G025620.2 , HORVU7Hr1G025620.3 , HORVU7Hr1G025620.8 , HORVU7Hr1G025620.9
Wheat TraesCS7D02G119700 , TraesCS7D02G119700 , TraesCS7D02G119700 , TraesCS7B02G020100
Populus -


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cDNA sequences
Sobic.009G099200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G180600 UBX domain-containing protein, putative, expressed -
2 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
3 Sobic.004G124500 transporter family protein, putative, expressed -
4 Sobic.006G101800 synaptonemal complex protein 2, putative, expressed -
5 Sobic.003G302200 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
6 Sobic.006G210700 potassium transporter, putative, expressed -
7 Sobic.002G313900 potassium transporter, putative, expressed -
8 Sobic.001G251200 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
9 Sobic.009G249700 expressed protein -
10 Sobic.004G100200 protein phosphatase 1 regulatory subunit SDS22, putative, expressed K17550: PPP1R7, protein phosphatase 1 regulatory subunit 7
11 Sobic.002G355800 calcium-binding protein, putative, expressed K08272: CAB39, calcium binding protein 39
12 Sobic.001G522100 transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
13 Sobic.010G086600 cyclin-T1-4, putative, expressed K15188: cyclin T
14 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
15 Sobic.006G251000 STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.005G143900 regulator of chromosome condensation, putative, expressed -
17 Sobic.002G193300 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
18 Sobic.010G226000 expressed protein -
19 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
20 Sobic.005G087900 non-lysosomal glucosylceramidase, putative, expressed K17108: non-lysosomal glucosylceramidase


Gene co-expression network
sample Sobic009G099200 Sobic009G099200 Sobic007G180600 Sobic007G180600 Sobic009G099200--Sobic007G180600 Sobic010G169900 Sobic010G169900 Sobic009G099200--Sobic010G169900 Sobic004G124500 Sobic004G124500 Sobic009G099200--Sobic004G124500 Sobic006G101800 Sobic006G101800 Sobic009G099200--Sobic006G101800 Sobic003G302200 Sobic003G302200 Sobic009G099200--Sobic003G302200 Sobic006G210700 Sobic006G210700 Sobic009G099200--Sobic006G210700 Sobic002G313900 Sobic002G313900 Sobic009G099200--Sobic002G313900 Sobic001G251200 Sobic001G251200 Sobic009G099200--Sobic001G251200 Sobic009G249700 Sobic009G249700 Sobic009G099200--Sobic009G249700 Sobic007G180600--Sobic001G251200 Sobic004G228800 Sobic004G228800 Sobic007G180600--Sobic004G228800 Sobic006G131000 Sobic006G131000 Sobic007G180600--Sobic006G131000 Sobic008G185500 Sobic008G185500 Sobic007G180600--Sobic008G185500 Sobic001G477700 Sobic001G477700 Sobic007G180600--Sobic001G477700 Sobic001G522100 Sobic001G522100 Sobic007G180600--Sobic001G522100 Sobic004G261600 Sobic004G261600 Sobic007G180600--Sobic004G261600 Sobic007G042900 Sobic007G042900 Sobic007G180600--Sobic007G042900 Sobic004G257200 Sobic004G257200 Sobic007G180600--Sobic004G257200 Sobic001G308400 Sobic001G308400 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic006G128100 Sobic006G128100 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic007G056600 Sobic007G056600 Sobic004G124500--Sobic007G056600 Sobic004G124500--Sobic007G180600 Sobic003G269800 Sobic003G269800 Sobic004G124500--Sobic003G269800 Sobic004G100200 Sobic004G100200 Sobic004G124500--Sobic004G100200 Sobic003G043800 Sobic003G043800 Sobic004G124500--Sobic003G043800 Sobic004G124500--Sobic004G228800 Sobic004G207900 Sobic004G207900 Sobic004G124500--Sobic004G207900 Sobic004G124500--Sobic009G099200 Sobic004G236200 Sobic004G236200 Sobic004G124500--Sobic004G236200 Sobic003G059750 Sobic003G059750 Sobic006G101800--Sobic003G059750 Sobic007G218000 Sobic007G218000 Sobic006G101800--Sobic007G218000 Sobic010G226000 Sobic010G226000 Sobic006G101800--Sobic010G226000 Sobic007G172200 Sobic007G172200 Sobic006G101800--Sobic007G172200 Sobic002G353600 Sobic002G353600 Sobic006G101800--Sobic002G353600 Sobic006G101800--Sobic009G249700 Sobic004G084700 Sobic004G084700 Sobic006G101800--Sobic004G084700 Sobic003G444800 Sobic003G444800 Sobic006G101800--Sobic003G444800 Sobic007G008900 Sobic007G008900 Sobic006G101800--Sobic007G008900 Sobic003G193500 Sobic003G193500 Sobic003G302200--Sobic003G193500 Sobic003G302200--Sobic002G079000 Sobic001G049400 Sobic001G049400 Sobic003G302200--Sobic001G049400 Sobic003G302200--Sobic010G169900 Sobic003G302200--Sobic002G355800 Sobic003G202600 Sobic003G202600 Sobic003G302200--Sobic003G202600 Sobic003G302200--Sobic009G128500 Sobic003G302200--Sobic004G100200 Sobic003G302200--Sobic006G210700 Sobic001G114200 Sobic001G114200 Sobic006G210700--Sobic001G114200 Sobic009G166600 Sobic009G166600 Sobic006G210700--Sobic009G166600 Sobic006G210700--Sobic006G128100 Sobic009G186700 Sobic009G186700 Sobic006G210700--Sobic009G186700 Sobic006G210700--Sobic010G169900 Sobic006G210700--Sobic002G313900 Sobic007G148400 Sobic007G148400 Sobic006G210700--Sobic007G148400 Sobic002G076500 Sobic002G076500 Sobic006G210700--Sobic002G076500 Sobic006G210700--Sobic001G490900 Sobic002G313900--Sobic009G166600 Sobic009G208100 Sobic009G208100 Sobic002G313900--Sobic009G208100 Sobic006G139100 Sobic006G139100 Sobic002G313900--Sobic006G139100 Sobic002G292900 Sobic002G292900 Sobic002G313900--Sobic002G292900 Sobic002G313900--Sobic006G210700 Sobic008G021000 Sobic008G021000 Sobic002G313900--Sobic008G021000 Sobic002G313900--Sobic009G249700 Sobic001G478800 Sobic001G478800 Sobic002G313900--Sobic001G478800 Sobic003G212900 Sobic003G212900 Sobic002G313900--Sobic003G212900 Sobic003G362600 Sobic003G362600 Sobic001G251200--Sobic003G362600 Sobic001G128300 Sobic001G128300 Sobic001G251200--Sobic001G128300 Sobic009G165700 Sobic009G165700 Sobic001G251200--Sobic009G165700 Sobic004G004300 Sobic004G004300 Sobic001G251200--Sobic004G004300 Sobic001G251200--Sobic004G261600 Sobic001G451400 Sobic001G451400 Sobic001G251200--Sobic001G451400 Sobic001G043100 Sobic001G043100 Sobic001G251200--Sobic001G043100 Sobic001G251200--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic001G251200--Sobic001G281100 Sobic009G249700--Sobic007G218000 Sobic003G093800 Sobic003G093800 Sobic009G249700--Sobic003G093800 Sobic003G189600 Sobic003G189600 Sobic009G249700--Sobic003G189600 Sobic003G394200 Sobic003G394200 Sobic009G249700--Sobic003G394200 Sobic005G034700 Sobic005G034700 Sobic009G249700--Sobic005G034700 Sobic004G345400 Sobic004G345400 Sobic009G249700--Sobic004G345400 Sobic009G249700--Sobic010G169900 Sobic009G249700--Sobic003G444800 Sobic009G249700--Sobic007G042900
Octagon: transcription factors


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