Gene annotation
Transcriptome id Sobic.008G064700.1
Synonym Sb08g005410, VTC5
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
VTC2, putative, expressed
UniProt C5YTA2
Pfam -
Panther DB PTHR20884 PTHR20884:SF10
NCBI CDD KOG2720; Predicted hydrolase (HIT family)
KEGG Orthology K14190; GDP-L-galactose phosphorylase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G55120 : galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4\'-O-glucosyltransferases
RAP-DB (Rice) LOC_Os12g08810.1 : VTC2, putative, expressed
MaizeGDB (Corn) Zm00025a040685
Brachypodium KQJ91948 , KQJ89005
Barley HORVU5Hr1G031870.2 , HORVU5Hr1G031870.1 , HORVU4Hr1G017030.9 , HORVU4Hr1G017030.8 , HORVU4Hr1G017030.3 , HORVU4Hr1G017030.2 , HORVU4Hr1G017030.1 , HORVU4Hr1G017030.7 , HORVU4Hr1G017030.6 , HORVU4Hr1G017030.5 , HORVU4Hr1G017030.4
Wheat TraesCS4D02G102200 , TraesCS5B02G111700 , TraesCS5B02G111700 , TraesCS5A02G107800 , TraesCS4A02G201200 , TraesCS4A02G201200 , TraesCS5D02G122900 , TraesCS5D02G122900 , TraesCS5A02G107800 , TraesCS5A02G107800 , TraesCS5A02G107800 , TraesCS4B02G105300 , TraesCS4B02G105300
Populus -


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cDNA sequences
Sobic.008G064700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G269300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed K15382: SLC50A, solute carrier family 50 (sugar transporter)
2 Sobic.003G228300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450 72A1, putative, expressed -
3 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
4 Sobic.006G221000 starch synthase 3(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@soluble starch synthase 3, chloroplast precursor, putative, expressed -
5 Sobic.001G485100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.001G046000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G283100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@lrgB-like family protein, expressed -
9 Sobic.001G207800 integral membrane protein, putative, expressed -
10 Sobic.004G035900 expressed protein -
11 Sobic.002G293500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sialin, putative, expressed -
12 Sobic.001G394800 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.003G005000 expressed protein -
14 Sobic.005G206500 sodium/calcium exchanger protein, putative, expressed K03452: magnesium/proton exchanger
15 Sobic.008G038500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endonuclease III-like protein 1, putative, expressed K10773: endonuclease III
16 Sobic.002G047400 "protein containing PDZ domain, a K-box domain, and a TPR region"(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SHOOT1 protein, putative, expressed -
17 Sobic.009G225600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
18 Sobic.007G227100 expressed protein -
19 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
20 Sobic.004G312600 COP1, putative, expressed K10143: RFWD2, E3 ubiquitin-protein ligase RFWD2


Gene co-expression network
sample Sobic008G064700 Sobic008G064700 Sobic003G269300 Sobic003G269300 Sobic008G064700--Sobic003G269300 Sobic003G228300 Sobic003G228300 Sobic008G064700--Sobic003G228300 Sobic002G382700 Sobic002G382700 Sobic008G064700--Sobic002G382700 Sobic006G221000 Sobic006G221000 Sobic008G064700--Sobic006G221000 Sobic001G485100 Sobic001G485100 Sobic008G064700--Sobic001G485100 Sobic010G249700 Sobic010G249700 Sobic008G064700--Sobic010G249700 Sobic001G046000 Sobic001G046000 Sobic008G064700--Sobic001G046000 Sobic001G283100 Sobic001G283100 Sobic008G064700--Sobic001G283100 Sobic001G207800 Sobic001G207800 Sobic008G064700--Sobic001G207800 Sobic003G269300--Sobic008G064700 Sobic009G225600 Sobic009G225600 Sobic003G269300--Sobic009G225600 Sobic003G269300--Sobic001G485100 Sobic003G269300--Sobic001G046000 Sobic002G047400 Sobic002G047400 Sobic003G269300--Sobic002G047400 Sobic003G269300--Sobic003G228300 Sobic003G186800 Sobic003G186800 Sobic003G269300--Sobic003G186800 Sobic003G269300--Sobic006G221000 Sobic003G269300--Sobic001G207800 Sobic003G228300--Sobic001G485100 Sobic003G228300--Sobic002G047400 Sobic006G191500 Sobic006G191500 Sobic003G228300--Sobic006G191500 Sobic003G409700 Sobic003G409700 Sobic003G228300--Sobic003G409700 Sobic008G149100 Sobic008G149100 Sobic003G228300--Sobic008G149100 Sobic001G499100 Sobic001G499100 Sobic003G228300--Sobic001G499100 Sobic009G133700 Sobic009G133700 Sobic003G228300--Sobic009G133700 Sobic003G228300--Sobic001G046000 Sobic003G380200 Sobic003G380200 Sobic003G228300--Sobic003G380200 Sobic002G382700--Sobic001G207800 Sobic001G258200 Sobic001G258200 Sobic002G382700--Sobic001G258200 Sobic006G090100 Sobic006G090100 Sobic002G382700--Sobic006G090100 Sobic003G341300 Sobic003G341300 Sobic002G382700--Sobic003G341300 Sobic002G382700--Sobic001G283100 Sobic007G058100 Sobic007G058100 Sobic002G382700--Sobic007G058100 Sobic001G077300 Sobic001G077300 Sobic002G382700--Sobic001G077300 Sobic002G162400 Sobic002G162400 Sobic002G382700--Sobic002G162400 Sobic007G227100 Sobic007G227100 Sobic002G382700--Sobic007G227100 Sobic007G108900 Sobic007G108900 Sobic006G221000--Sobic007G108900 Sobic006G221000--Sobic001G283100 Sobic006G221000--Sobic001G207800 Sobic006G221000--Sobic006G090100 Sobic001G015200 Sobic001G015200 Sobic006G221000--Sobic001G015200 Sobic006G221000--Sobic002G047400 Sobic001G303200 Sobic001G303200 Sobic006G221000--Sobic001G303200 Sobic004G035900 Sobic004G035900 Sobic006G221000--Sobic004G035900 Sobic003G003450 Sobic003G003450 Sobic006G221000--Sobic003G003450 Sobic001G485100--Sobic006G191500 Sobic002G161400 Sobic002G161400 Sobic001G485100--Sobic002G161400 Sobic001G485100--Sobic003G380200 Sobic001G485100--Sobic003G186800 Sobic001G485100--Sobic001G046000 Sobic001G331600 Sobic001G331600 Sobic001G485100--Sobic001G331600 Sobic001G485100--Sobic003G228300 Sobic001G485100--Sobic009G225600 Sobic004G344600 Sobic004G344600 Sobic001G485100--Sobic004G344600 Sobic001G017300 Sobic001G017300 Sobic010G249700--Sobic001G017300 Sobic005G101200 Sobic005G101200 Sobic010G249700--Sobic005G101200 Sobic007G105500 Sobic007G105500 Sobic010G249700--Sobic007G105500 Sobic006G093800 Sobic006G093800 Sobic010G249700--Sobic006G093800 Sobic009G256100 Sobic009G256100 Sobic010G249700--Sobic009G256100 Sobic010G255300 Sobic010G255300 Sobic010G249700--Sobic010G255300 Sobic003G282000 Sobic003G282000 Sobic010G249700--Sobic003G282000 Sobic010G249700--Sobic002G382700 Sobic004G356400 Sobic004G356400 Sobic010G249700--Sobic004G356400 Sobic001G046000--Sobic009G225600 Sobic001G046000--Sobic001G485100 Sobic010G104700 Sobic010G104700 Sobic001G046000--Sobic010G104700 Sobic001G046000--Sobic002G047400 Sobic001G046000--Sobic003G186800 Sobic010G101000 Sobic010G101000 Sobic001G046000--Sobic010G101000 Sobic001G046000--Sobic006G090100 Sobic004G153900 Sobic004G153900 Sobic001G046000--Sobic004G153900 Sobic001G046000--Sobic006G191500 Sobic001G283100--Sobic006G090100 Sobic003G094100 Sobic003G094100 Sobic001G283100--Sobic003G094100 Sobic001G283100--Sobic001G207800 Sobic001G283100--Sobic003G341300 Sobic001G283100--Sobic007G108900 Sobic001G393300 Sobic001G393300 Sobic001G283100--Sobic001G393300 Sobic007G157300 Sobic007G157300 Sobic001G283100--Sobic007G157300 Sobic001G509200 Sobic001G509200 Sobic001G283100--Sobic001G509200 Sobic001G283100--Sobic002G382700 Sobic001G207800--Sobic006G090100 Sobic001G207800--Sobic001G283100 Sobic001G207800--Sobic002G382700 Sobic001G207800--Sobic001G509200 Sobic001G207800--Sobic001G077300 Sobic001G207800--Sobic007G108900 Sobic009G073900 Sobic009G073900 Sobic001G207800--Sobic009G073900 Sobic001G207800--Sobic003G341300 Sobic001G207800--Sobic007G157300
Octagon: transcription factors


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