Gene annotation
Transcriptome id Sobic.004G219400.1
Synonym Sb04g026430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
RNA recognition motif containing protein, putative, expressed
UniProt C5XXS8
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G04500 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os02g40900.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032017
Brachypodium KQK00397
Barley HORVU6Hr1G058450.24 , HORVU6Hr1G058450.36 , HORVU6Hr1G058450.37 , HORVU6Hr1G058450.34 , HORVU6Hr1G058450.35 , HORVU6Hr1G058450.32 , HORVU6Hr1G058450.33 , HORVU6Hr1G058450.30 , HORVU6Hr1G058450.31 , HORVU6Hr1G058450.38 , HORVU6Hr1G058450.39 , HORVU6Hr1G058450.42 , HORVU6Hr1G058450.41 , HORVU6Hr1G058450.40 , HORVU6Hr1G058450.6 , HORVU6Hr1G058450.7 , HORVU6Hr1G058450.4 , HORVU6Hr1G058450.5 , HORVU6Hr1G058450.2 , HORVU6Hr1G058450.3 , HORVU6Hr1G058450.1 , HORVU6Hr1G058450.8 , HORVU6Hr1G058450.9 , HORVU6Hr1G058450.18 , HORVU6Hr1G058450.19 , HORVU6Hr1G058450.14 , HORVU6Hr1G058450.15 , HORVU6Hr1G058450.16 , HORVU6Hr1G058450.17 , HORVU6Hr1G058450.10 , HORVU6Hr1G058450.11 , HORVU6Hr1G058450.12 , HORVU6Hr1G058450.13 , HORVU6Hr1G058450.21 , HORVU6Hr1G058450.20 , HORVU6Hr1G058450.23 , HORVU6Hr1G058450.22 , HORVU6Hr1G058450.25 , HORVU6Hr1G058450.27 , HORVU6Hr1G058450.26 , HORVU6Hr1G058450.29 , HORVU6Hr1G058450.28
Wheat TraesCS6A02G224800 , TraesCS6B02G256600 , TraesCS6D02G209600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G498000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
2 Sobic.002G381700 WD-40 repeat family protein, putative, expressed -
3 Sobic.003G391200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
4 Sobic.001G017300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA-binding protein containing a PIN domain, putative, expressed K06962: uncharacterized protein
5 Sobic.009G015100 ACT domain containing protein, expressed -
6 Sobic.006G130300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
7 Sobic.004G355700 C2 domain containing protein, putative, expressed -
8 Sobic.001G514800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine acetyltransferase protein, putative, expressed K00640: serine O-acetyltransferase
9 Sobic.008G149000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
10 Sobic.008G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@nuclear transcription factor Y subunit, putative, expressed K08064: NFYA, nuclear transcription factor Y, alpha
11 Sobic.001G169900 seed maturation protein PM23, putative, expressed -
12 Sobic.006G093800 GRAS family transcription factor domain containing protein, expressed -
13 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
14 Sobic.003G282000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@suppressor of phythchrome A, putative, expressed -
15 Sobic.002G382700 heat shock protein DnaJ, putative, expressed -
16 Sobic.010G249700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.004G328000 snf1-related kinase interactor 2, putative, expressed -
18 Sobic.001G134100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-AMP-activated protein kinase-related, putative, expressed -
19 Sobic.002G306800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
20 Sobic.004G322700 - -


Gene co-expression network
sample Sobic004G219400 Sobic004G219400 Sobic001G498000 Sobic001G498000 Sobic004G219400--Sobic001G498000 Sobic002G381700 Sobic002G381700 Sobic004G219400--Sobic002G381700 Sobic003G391200 Sobic003G391200 Sobic004G219400--Sobic003G391200 Sobic001G017300 Sobic001G017300 Sobic004G219400--Sobic001G017300 Sobic009G015100 Sobic009G015100 Sobic004G219400--Sobic009G015100 Sobic006G130300 Sobic006G130300 Sobic004G219400--Sobic006G130300 Sobic004G355700 Sobic004G355700 Sobic004G219400--Sobic004G355700 Sobic001G514800 Sobic001G514800 Sobic004G219400--Sobic001G514800 Sobic008G149000 Sobic008G149000 Sobic004G219400--Sobic008G149000 Sobic001G498000--Sobic004G219400 Sobic001G498000--Sobic006G130300 Sobic001G498000--Sobic003G391200 Sobic008G115900 Sobic008G115900 Sobic001G498000--Sobic008G115900 Sobic002G382700 Sobic002G382700 Sobic001G498000--Sobic002G382700 Sobic001G498000--Sobic001G017300 Sobic006G158100 Sobic006G158100 Sobic001G498000--Sobic006G158100 Sobic006G221000 Sobic006G221000 Sobic001G498000--Sobic006G221000 Sobic004G082300 Sobic004G082300 Sobic001G498000--Sobic004G082300 Sobic002G381700--Sobic004G219400 Sobic002G295100 Sobic002G295100 Sobic002G381700--Sobic002G295100 Sobic002G381700--Sobic001G498000 Sobic008G064700 Sobic008G064700 Sobic002G381700--Sobic008G064700 Sobic003G425300 Sobic003G425300 Sobic002G381700--Sobic003G425300 Sobic003G269300 Sobic003G269300 Sobic002G381700--Sobic003G269300 Sobic003G313900 Sobic003G313900 Sobic002G381700--Sobic003G313900 Sobic004G323400 Sobic004G323400 Sobic002G381700--Sobic004G323400 Sobic001G057700 Sobic001G057700 Sobic002G381700--Sobic001G057700 Sobic003G391200--Sobic002G382700 Sobic005G206300 Sobic005G206300 Sobic003G391200--Sobic005G206300 Sobic005G101200 Sobic005G101200 Sobic003G391200--Sobic005G101200 Sobic006G153400 Sobic006G153400 Sobic003G391200--Sobic006G153400 Sobic003G391200--Sobic001G017300 Sobic007G227100 Sobic007G227100 Sobic003G391200--Sobic007G227100 Sobic004G035900 Sobic004G035900 Sobic003G391200--Sobic004G035900 Sobic007G006400 Sobic007G006400 Sobic003G391200--Sobic007G006400 Sobic002G306800 Sobic002G306800 Sobic003G391200--Sobic002G306800 Sobic001G017300--Sobic006G158100 Sobic004G356400 Sobic004G356400 Sobic001G017300--Sobic004G356400 Sobic006G093800 Sobic006G093800 Sobic001G017300--Sobic006G093800 Sobic010G249700 Sobic010G249700 Sobic001G017300--Sobic010G249700 Sobic007G136200 Sobic007G136200 Sobic001G017300--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic001G017300--Sobic003G276300 Sobic001G017300--Sobic005G101200 Sobic001G169900 Sobic001G169900 Sobic001G017300--Sobic001G169900 Sobic010G002700 Sobic010G002700 Sobic001G017300--Sobic010G002700 Sobic007G105500 Sobic007G105500 Sobic009G015100--Sobic007G105500 Sobic005G231500 Sobic005G231500 Sobic009G015100--Sobic005G231500 Sobic009G015100--Sobic005G206300 Sobic010G255300 Sobic010G255300 Sobic009G015100--Sobic010G255300 Sobic004G281800 Sobic004G281800 Sobic009G015100--Sobic004G281800 Sobic009G015100--Sobic005G101200 Sobic010G085100 Sobic010G085100 Sobic009G015100--Sobic010G085100 Sobic002G404800 Sobic002G404800 Sobic009G015100--Sobic002G404800 Sobic009G015100--Sobic004G356400 Sobic001G100000 Sobic001G100000 Sobic006G130300--Sobic001G100000 Sobic006G238200 Sobic006G238200 Sobic006G130300--Sobic006G238200 Sobic007G140800 Sobic007G140800 Sobic006G130300--Sobic007G140800 Sobic001G020100 Sobic001G020100 Sobic006G130300--Sobic001G020100 Sobic001G329400 Sobic001G329400 Sobic006G130300--Sobic001G329400 Sobic001G491000 Sobic001G491000 Sobic006G130300--Sobic001G491000 Sobic004G283100 Sobic004G283100 Sobic006G130300--Sobic004G283100 Sobic006G130300--Sobic008G115900 Sobic006G207800 Sobic006G207800 Sobic006G130300--Sobic006G207800 Sobic003G271400 Sobic003G271400 Sobic004G355700--Sobic003G271400 Sobic001G212300 Sobic001G212300 Sobic004G355700--Sobic001G212300 Sobic004G337400 Sobic004G337400 Sobic004G355700--Sobic004G337400 Sobic004G042200 Sobic004G042200 Sobic004G355700--Sobic004G042200 Sobic005G198000 Sobic005G198000 Sobic004G355700--Sobic005G198000 Sobic008G168300 Sobic008G168300 Sobic004G355700--Sobic008G168300 Sobic004G355700--Sobic003G276300 Sobic005G106600 Sobic005G106600 Sobic004G355700--Sobic005G106600 Sobic003G191700 Sobic003G191700 Sobic004G355700--Sobic003G191700 Sobic001G514800--Sobic001G017300 Sobic001G239500 Sobic001G239500 Sobic001G514800--Sobic001G239500 Sobic002G172700 Sobic002G172700 Sobic001G514800--Sobic002G172700 Sobic009G054900 Sobic009G054900 Sobic001G514800--Sobic009G054900 Sobic001G514800--Sobic001G020100 Sobic001G514800--Sobic004G035900 Sobic001G514800--Sobic006G130300 Sobic001G514800--Sobic004G356400 Sobic001G514800--Sobic007G136200 Sobic007G142200 Sobic007G142200 Sobic008G149000--Sobic007G142200 Sobic003G389700 Sobic003G389700 Sobic008G149000--Sobic003G389700 Sobic001G446100 Sobic001G446100 Sobic008G149000--Sobic001G446100 Sobic001G134100 Sobic001G134100 Sobic008G149000--Sobic001G134100 Sobic006G244000 Sobic006G244000 Sobic008G149000--Sobic006G244000 Sobic008G149000--Sobic001G329400 Sobic009G048900 Sobic009G048900 Sobic008G149000--Sobic009G048900 Sobic008G149000--Sobic005G231500 Sobic004G255600 Sobic004G255600 Sobic008G149000--Sobic004G255600
Octagon: transcription factors


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