Gene annotation
Transcriptome id Sobic.001G193300.1
Synonym Sb01g017030
Functional annotation TBC domain containing protein, expressed
UniProt C5WVD1
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF326
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41940 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os10g37410.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017416
Brachypodium KQJ97470
Barley -
Wheat TraesCS1A02G181400 , TraesCS1B02G199400 , TraesCS1D02G184700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G193300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G068500 expressed protein -
2 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
3 Sobic.004G257100 transmembrane 9 superfamily member, putative, expressed -
4 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
5 Sobic.008G033500 nucleolar GTPase, putative, expressed -
6 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
7 Sobic.003G176000 lipase family protein, putative, expressed -
8 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
9 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
10 Sobic.003G006300 expressed protein -
11 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
12 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
13 Sobic.008G046500 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
14 Sobic.010G249100 ZOS8-11 - C2H2 zinc finger protein, expressed -
15 Sobic.007G093800 expressed protein -
16 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase
17 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
18 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
19 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
20 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1


Gene co-expression network
sample Sobic001G193300 Sobic001G193300 Sobic009G068500 Sobic009G068500 Sobic001G193300--Sobic009G068500 Sobic008G089100 Sobic008G089100 Sobic001G193300--Sobic008G089100 Sobic004G257100 Sobic004G257100 Sobic001G193300--Sobic004G257100 Sobic002G359400 Sobic002G359400 Sobic001G193300--Sobic002G359400 Sobic008G033500 Sobic008G033500 Sobic001G193300--Sobic008G033500 Sobic004G202500 Sobic004G202500 Sobic001G193300--Sobic004G202500 Sobic003G176000 Sobic003G176000 Sobic001G193300--Sobic003G176000 Sobic001G007000 Sobic001G007000 Sobic001G193300--Sobic001G007000 Sobic008G124900 Sobic008G124900 Sobic001G193300--Sobic008G124900 Sobic009G068500--Sobic001G007000 Sobic009G068500--Sobic001G193300 Sobic003G264100 Sobic003G264100 Sobic009G068500--Sobic003G264100 Sobic007G093800 Sobic007G093800 Sobic009G068500--Sobic007G093800 Sobic003G006300 Sobic003G006300 Sobic009G068500--Sobic003G006300 Sobic003G365300 Sobic003G365300 Sobic009G068500--Sobic003G365300 Sobic009G068500--Sobic002G359400 Sobic010G020400 Sobic010G020400 Sobic009G068500--Sobic010G020400 Sobic010G251000 Sobic010G251000 Sobic009G068500--Sobic010G251000 Sobic002G045600 Sobic002G045600 Sobic008G089100--Sobic002G045600 Sobic001G207000 Sobic001G207000 Sobic008G089100--Sobic001G207000 Sobic001G392300 Sobic001G392300 Sobic008G089100--Sobic001G392300 Sobic003G408600 Sobic003G408600 Sobic008G089100--Sobic003G408600 Sobic003G313500 Sobic003G313500 Sobic008G089100--Sobic003G313500 Sobic001G194200 Sobic001G194200 Sobic008G089100--Sobic001G194200 Sobic001G390800 Sobic001G390800 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic003G164200 Sobic003G164200 Sobic008G089100--Sobic003G164200 Sobic004G131300 Sobic004G131300 Sobic004G257100--Sobic004G131300 Sobic001G251100 Sobic001G251100 Sobic004G257100--Sobic001G251100 Sobic004G092500 Sobic004G092500 Sobic004G257100--Sobic004G092500 Sobic006G073200 Sobic006G073200 Sobic004G257100--Sobic006G073200 Sobic005G172500 Sobic005G172500 Sobic004G257100--Sobic005G172500 Sobic008G004600 Sobic008G004600 Sobic004G257100--Sobic008G004600 Sobic001G227400 Sobic001G227400 Sobic004G257100--Sobic001G227400 Sobic008G112800 Sobic008G112800 Sobic004G257100--Sobic008G112800 Sobic004G257100--Sobic001G392300 Sobic002G359400--Sobic001G007000 Sobic002G359400--Sobic001G392300 Sobic010G262000 Sobic010G262000 Sobic002G359400--Sobic010G262000 Sobic006G041600 Sobic006G041600 Sobic002G359400--Sobic006G041600 Sobic002G359400--Sobic008G004600 Sobic002G305000 Sobic002G305000 Sobic002G359400--Sobic002G305000 Sobic002G325300 Sobic002G325300 Sobic002G359400--Sobic002G325300 Sobic006G103200 Sobic006G103200 Sobic002G359400--Sobic006G103200 Sobic003G102400 Sobic003G102400 Sobic002G359400--Sobic003G102400 Sobic008G033500--Sobic010G020400 Sobic001G014800 Sobic001G014800 Sobic008G033500--Sobic001G014800 Sobic001G333100 Sobic001G333100 Sobic008G033500--Sobic001G333100 Sobic002G020700 Sobic002G020700 Sobic008G033500--Sobic002G020700 Sobic007G162100 Sobic007G162100 Sobic008G033500--Sobic007G162100 Sobic006G127600 Sobic006G127600 Sobic008G033500--Sobic006G127600 Sobic003G422900 Sobic003G422900 Sobic008G033500--Sobic003G422900 Sobic008G033500--Sobic009G068500 Sobic008G033500--Sobic001G193300 Sobic004G066200 Sobic004G066200 Sobic004G202500--Sobic004G066200 Sobic010G278200 Sobic010G278200 Sobic004G202500--Sobic010G278200 Sobic003G099100 Sobic003G099100 Sobic004G202500--Sobic003G099100 Sobic004G202500--Sobic008G124900 Sobic004G202500--Sobic001G193300 Sobic006G101700 Sobic006G101700 Sobic004G202500--Sobic006G101700 Sobic004G202500--Sobic001G007000 Sobic004G202500--Sobic007G093800 Sobic010G130000 Sobic010G130000 Sobic004G202500--Sobic010G130000 Sobic004G131800 Sobic004G131800 Sobic003G176000--Sobic004G131800 Sobic002G344000 Sobic002G344000 Sobic003G176000--Sobic002G344000 Sobic002G211800 Sobic002G211800 Sobic003G176000--Sobic002G211800 Sobic002G170200 Sobic002G170200 Sobic003G176000--Sobic002G170200 Sobic010G032900 Sobic010G032900 Sobic003G176000--Sobic010G032900 Sobic003G253600 Sobic003G253600 Sobic003G176000--Sobic003G253600 Sobic003G176000--Sobic002G325300 Sobic002G294800 Sobic002G294800 Sobic003G176000--Sobic002G294800 Sobic005G059800 Sobic005G059800 Sobic003G176000--Sobic005G059800 Sobic001G007000--Sobic009G068500 Sobic001G007000--Sobic010G251000 Sobic001G007000--Sobic001G392300 Sobic001G007000--Sobic002G359400 Sobic004G353200 Sobic004G353200 Sobic001G007000--Sobic004G353200 Sobic010G205800 Sobic010G205800 Sobic001G007000--Sobic010G205800 Sobic008G046500 Sobic008G046500 Sobic001G007000--Sobic008G046500 Sobic001G080700 Sobic001G080700 Sobic001G007000--Sobic001G080700 Sobic001G031100 Sobic001G031100 Sobic001G007000--Sobic001G031100 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic006G033200 Sobic006G033200 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic008G124900--Sobic009G068500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.