Gene annotation
Transcriptome id Sobic.003G354900.1
Synonym Sb03g039710
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
regulator of chromosome condensation, putative, expressed
UniProt A0A1W0W0E6
Pfam PF13540 PF00415
Panther DB PTHR22870 PTHR22870:SF204
NCBI CDD KOG1427; Uncharacterized conserved protein, contains RCC1 domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55580 : Regulator of chromosome condensation (RCC1) family protein
RAP-DB (Rice) LOC_Os01g62810.2 : regulator of chromosome condensation, putative, expressed
MaizeGDB (Corn) Zm00025a026868 , Zm00025a039662
Brachypodium PNT73192 , PNT73193 , PNT73191
Barley HORVU3Hr1G085860.12 , HORVU3Hr1G085860.13 , HORVU3Hr1G085860.38 , HORVU3Hr1G085860.39 , HORVU3Hr1G085860.34 , HORVU3Hr1G085860.35 , HORVU3Hr1G085860.36 , HORVU3Hr1G085860.37 , HORVU3Hr1G085860.30 , HORVU3Hr1G085860.31 , HORVU3Hr1G085860.32 , HORVU3Hr1G085860.33 , HORVU3Hr1G085860.18 , HORVU3Hr1G085860.19 , HORVU3Hr1G085860.45 , HORVU3Hr1G085860.44 , HORVU3Hr1G085860.47 , HORVU3Hr1G085860.46 , HORVU3Hr1G085860.41 , HORVU3Hr1G085860.40 , HORVU3Hr1G085860.43 , HORVU3Hr1G085860.42 , HORVU3Hr1G085860.4 , HORVU3Hr1G085860.5 , HORVU3Hr1G085860.6 , HORVU3Hr1G085860.7 , HORVU3Hr1G085860.1 , HORVU3Hr1G085860.2 , HORVU3Hr1G085860.3 , HORVU3Hr1G085860.8 , HORVU3Hr1G085860.9 , HORVU3Hr1G085860.16 , HORVU3Hr1G085860.17 , HORVU3Hr1G085860.14 , HORVU3Hr1G085860.15 , HORVU3Hr1G085860.10 , HORVU3Hr1G085860.11 , HORVU3Hr1G085860.27 , HORVU3Hr1G085860.25 , HORVU3Hr1G085860.24 , HORVU3Hr1G085860.23 , HORVU3Hr1G085860.22 , HORVU3Hr1G085860.21 , HORVU3Hr1G085860.20 , HORVU3Hr1G085860.29 , HORVU3Hr1G085860.28 , HORVU3Hr1G085860.26
Wheat TraesCS3D02G356500 , TraesCS3D02G356500 , TraesCS3D02G356500 , TraesCS3A02G362800 , TraesCS3B02G395200 , TraesCS3B02G395200 , TraesCS3B02G395200 , TraesCS3B02G395200 , TraesCS3A02G362800 , TraesCS3A02G362800 , TraesCS3D02G356500 , TraesCS3A02G362800 , TraesCS3A02G362800
Populus PNT17599 , PNT17600


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G446200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@clathrin adaptor complex small chain domain containing protein, expressed K12399: AP-3 complex subunit sigma
2 Sobic.003G425500 Calcium-binding protein(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML10 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
3 Sobic.009G190700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@jacalin-like lectin domain containing protein, expressed -
4 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
5 Sobic.001G390200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
8 Sobic.004G219400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
9 Sobic.008G152600 LIM domain-containing protein, putative, expressed -
10 Sobic.001G333600 membrane-anchored ubiquitin-fold protein, putative, expressed -
11 Sobic.006G150400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G350800 SLT1 protein, putative, expressed -
13 Sobic.003G051000 expressed protein -
14 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.001G475400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Leucine-rich repeat receptor(PubMedID : 31721651)@leucine rich repeat domain containing protein, putative, expressed -
16 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
17 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
18 Sobic.002G381700 WD-40 repeat family protein, putative, expressed -
19 Sobic.002G247000 expressed protein -
20 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G354900 Sobic003G354900 Sobic001G446200 Sobic001G446200 Sobic003G354900--Sobic001G446200 Sobic003G425500 Sobic003G425500 Sobic003G354900--Sobic003G425500 Sobic009G190700 Sobic009G190700 Sobic003G354900--Sobic009G190700 Sobic010G019000 Sobic010G019000 Sobic003G354900--Sobic010G019000 Sobic001G390200 Sobic001G390200 Sobic003G354900--Sobic001G390200 Sobic001G352400 Sobic001G352400 Sobic003G354900--Sobic001G352400 Sobic001G391300 Sobic001G391300 Sobic003G354900--Sobic001G391300 Sobic004G219400 Sobic004G219400 Sobic003G354900--Sobic004G219400 Sobic008G152600 Sobic008G152600 Sobic003G354900--Sobic008G152600 Sobic001G446200--Sobic008G152600 Sobic001G446200--Sobic003G354900 Sobic008G047400 Sobic008G047400 Sobic001G446200--Sobic008G047400 Sobic004G255700 Sobic004G255700 Sobic001G446200--Sobic004G255700 Sobic001G193300 Sobic001G193300 Sobic001G446200--Sobic001G193300 Sobic009G200800 Sobic009G200800 Sobic001G446200--Sobic009G200800 Sobic008G140100 Sobic008G140100 Sobic001G446200--Sobic008G140100 Sobic007G164000 Sobic007G164000 Sobic001G446200--Sobic007G164000 Sobic003G051000 Sobic003G051000 Sobic001G446200--Sobic003G051000 Sobic003G425500--Sobic003G354900 Sobic009G069300 Sobic009G069300 Sobic003G425500--Sobic009G069300 Sobic003G339700 Sobic003G339700 Sobic003G425500--Sobic003G339700 Sobic009G195800 Sobic009G195800 Sobic003G425500--Sobic009G195800 Sobic001G333600 Sobic001G333600 Sobic003G425500--Sobic001G333600 Sobic003G425500--Sobic001G391300 Sobic003G350800 Sobic003G350800 Sobic003G425500--Sobic003G350800 Sobic007G160200 Sobic007G160200 Sobic003G425500--Sobic007G160200 Sobic009G183101 Sobic009G183101 Sobic003G425500--Sobic009G183101 Sobic008G059100 Sobic008G059100 Sobic009G190700--Sobic008G059100 Sobic003G313900 Sobic003G313900 Sobic009G190700--Sobic003G313900 Sobic009G190700--Sobic007G164000 Sobic009G190700--Sobic003G354900 Sobic001G409300 Sobic001G409300 Sobic009G190700--Sobic001G409300 Sobic009G190700--Sobic003G051000 Sobic002G187700 Sobic002G187700 Sobic009G190700--Sobic002G187700 Sobic001G070000 Sobic001G070000 Sobic009G190700--Sobic001G070000 Sobic003G242000 Sobic003G242000 Sobic009G190700--Sobic003G242000 Sobic010G217600 Sobic010G217600 Sobic010G019000--Sobic010G217600 Sobic004G281800 Sobic004G281800 Sobic010G019000--Sobic004G281800 Sobic003G021100 Sobic003G021100 Sobic010G019000--Sobic003G021100 Sobic010G019000--Sobic001G352400 Sobic002G305000 Sobic002G305000 Sobic010G019000--Sobic002G305000 Sobic010G275700 Sobic010G275700 Sobic010G019000--Sobic010G275700 Sobic001G303100 Sobic001G303100 Sobic010G019000--Sobic001G303100 Sobic001G214100 Sobic001G214100 Sobic010G019000--Sobic001G214100 Sobic009G038900 Sobic009G038900 Sobic010G019000--Sobic009G038900 Sobic001G390200--Sobic007G164000 Sobic001G128300 Sobic001G128300 Sobic001G390200--Sobic001G128300 Sobic001G390200--Sobic010G019000 Sobic003G198800 Sobic003G198800 Sobic001G390200--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic001G390200--Sobic001G381600 Sobic001G390200--Sobic008G152600 Sobic001G390200--Sobic008G047400 Sobic001G390200--Sobic003G242000 Sobic001G064200 Sobic001G064200 Sobic001G390200--Sobic001G064200 Sobic001G352400--Sobic004G281800 Sobic001G352400--Sobic010G275700 Sobic002G382700 Sobic002G382700 Sobic001G352400--Sobic002G382700 Sobic004G322700 Sobic004G322700 Sobic001G352400--Sobic004G322700 Sobic002G119100 Sobic002G119100 Sobic001G352400--Sobic002G119100 Sobic008G038500 Sobic008G038500 Sobic001G352400--Sobic008G038500 Sobic005G101200 Sobic005G101200 Sobic001G352400--Sobic005G101200 Sobic004G169000 Sobic004G169000 Sobic001G352400--Sobic004G169000 Sobic001G352400--Sobic009G038900 Sobic004G097300 Sobic004G097300 Sobic001G391300--Sobic004G097300 Sobic004G276200 Sobic004G276200 Sobic001G391300--Sobic004G276200 Sobic002G086800 Sobic002G086800 Sobic001G391300--Sobic002G086800 Sobic006G220200 Sobic006G220200 Sobic001G391300--Sobic006G220200 Sobic004G332100 Sobic004G332100 Sobic001G391300--Sobic004G332100 Sobic001G391300--Sobic003G339700 Sobic001G087700 Sobic001G087700 Sobic001G391300--Sobic001G087700 Sobic001G470900 Sobic001G470900 Sobic001G391300--Sobic001G470900 Sobic001G391300--Sobic009G183101 Sobic001G498000 Sobic001G498000 Sobic004G219400--Sobic001G498000 Sobic002G381700 Sobic002G381700 Sobic004G219400--Sobic002G381700 Sobic003G391200 Sobic003G391200 Sobic004G219400--Sobic003G391200 Sobic001G017300 Sobic001G017300 Sobic004G219400--Sobic001G017300 Sobic009G015100 Sobic009G015100 Sobic004G219400--Sobic009G015100 Sobic006G130300 Sobic006G130300 Sobic004G219400--Sobic006G130300 Sobic004G355700 Sobic004G355700 Sobic004G219400--Sobic004G355700 Sobic001G514800 Sobic001G514800 Sobic004G219400--Sobic001G514800 Sobic008G149000 Sobic008G149000 Sobic004G219400--Sobic008G149000 Sobic008G152600--Sobic009G200800 Sobic008G152600--Sobic001G446200 Sobic008G152600--Sobic008G047400 Sobic008G152600--Sobic003G242000 Sobic001G328200 Sobic001G328200 Sobic008G152600--Sobic001G328200 Sobic008G152600--Sobic003G051000 Sobic008G124900 Sobic008G124900 Sobic008G152600--Sobic008G124900 Sobic002G311100 Sobic002G311100 Sobic008G152600--Sobic002G311100 Sobic008G152600--Sobic007G164000
Octagon: transcription factors


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