Gene annotation
Transcriptome id Sobic.001G390200.1,Sobic.001G390200.3,Sobic.001G390200.2
Synonym CIPK3, SbCIPK27, Sb01g037000,CBL-interacting protein kinases, SnRK3.17
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Interacting factor of CBLs (PubMedID : 19860013)
CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
UniProt A0A1B6QNK5 , A0A1B6QNJ0 , C4P7S0
Pfam PF14531 PF03822 PF03822 PF00069
Panther DB PTHR24343 PTHR24343:SF192
NCBI CDD KOG0583; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0007165; signal transduction GO:0007165signal transduction GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G26980 : CBL-interacting protein kinase 3
RAP-DB (Rice) LOC_Os03g20380.1 : CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
MaizeGDB (Corn) Zm00025a002230 , Zm00025a045701
Brachypodium KQK21928 , KQK21927
Barley HORVU4Hr1G052200.3 , HORVU4Hr1G052200.2 , HORVU4Hr1G052200.1 , HORVU4Hr1G052200.5 , HORVU4Hr1G052200.4
Wheat TraesCS4A02G126800 , TraesCS4A02G126800 , TraesCS4A02G126800 , TraesCS4A02G126800 , TraesCS4D02G179700 , TraesCS4D02G179700 , TraesCS4D02G179700 , TraesCS4B02G178100 , TraesCS4B02G178100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G390200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
2 Sobic.001G128300 chloride channel protein CLC-d, putative, expressed K05016: chloride channel 7
3 Sobic.010G019000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized membrane protein, putative, expressed -
4 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
5 Sobic.001G381600 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
6 Sobic.008G152600 LIM domain-containing protein, putative, expressed -
7 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
8 Sobic.003G242000 AMP-binding enzyme, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
9 Sobic.001G064200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G151100 protein kinase domain containing protein, expressed -
11 Sobic.001G481900 SAC domain containing protein, putative, expressed -
12 Sobic.003G354900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulator of chromosome condensation, putative, expressed -
13 Sobic.005G150350 - -
14 Sobic.003G051000 expressed protein -
15 Sobic.002G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@small G protein family protein, putative, expressed -
16 Sobic.004G306500 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.002G187700 expressed protein -
18 Sobic.004G091100 nuclear protein ZAP-related, putative, expressed K17602: YLP motif-containing protein 1
19 Sobic.004G281800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, expressed -
20 Sobic.001G352400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G390200 Sobic001G390200 Sobic007G164000 Sobic007G164000 Sobic001G390200--Sobic007G164000 Sobic001G128300 Sobic001G128300 Sobic001G390200--Sobic001G128300 Sobic010G019000 Sobic010G019000 Sobic001G390200--Sobic010G019000 Sobic003G198800 Sobic003G198800 Sobic001G390200--Sobic003G198800 Sobic001G381600 Sobic001G381600 Sobic001G390200--Sobic001G381600 Sobic008G152600 Sobic008G152600 Sobic001G390200--Sobic008G152600 Sobic008G047400 Sobic008G047400 Sobic001G390200--Sobic008G047400 Sobic003G242000 Sobic003G242000 Sobic001G390200--Sobic003G242000 Sobic001G064200 Sobic001G064200 Sobic001G390200--Sobic001G064200 Sobic003G051000 Sobic003G051000 Sobic007G164000--Sobic003G051000 Sobic002G187700 Sobic002G187700 Sobic007G164000--Sobic002G187700 Sobic001G481900 Sobic001G481900 Sobic007G164000--Sobic001G481900 Sobic003G190400 Sobic003G190400 Sobic007G164000--Sobic003G190400 Sobic007G164000--Sobic001G128300 Sobic008G059100 Sobic008G059100 Sobic007G164000--Sobic008G059100 Sobic007G164000--Sobic003G198800 Sobic007G164000--Sobic001G390200 Sobic001G057700 Sobic001G057700 Sobic007G164000--Sobic001G057700 Sobic009G165700 Sobic009G165700 Sobic001G128300--Sobic009G165700 Sobic001G451400 Sobic001G451400 Sobic001G128300--Sobic001G451400 Sobic001G251200 Sobic001G251200 Sobic001G128300--Sobic001G251200 Sobic004G091100 Sobic004G091100 Sobic001G128300--Sobic004G091100 Sobic001G043100 Sobic001G043100 Sobic001G128300--Sobic001G043100 Sobic009G109925 Sobic009G109925 Sobic001G128300--Sobic009G109925 Sobic001G128300--Sobic003G198800 Sobic001G441400 Sobic001G441400 Sobic001G128300--Sobic001G441400 Sobic002G211800 Sobic002G211800 Sobic001G128300--Sobic002G211800 Sobic010G217600 Sobic010G217600 Sobic010G019000--Sobic010G217600 Sobic004G281800 Sobic004G281800 Sobic010G019000--Sobic004G281800 Sobic003G021100 Sobic003G021100 Sobic010G019000--Sobic003G021100 Sobic001G352400 Sobic001G352400 Sobic010G019000--Sobic001G352400 Sobic002G305000 Sobic002G305000 Sobic010G019000--Sobic002G305000 Sobic010G275700 Sobic010G275700 Sobic010G019000--Sobic010G275700 Sobic001G303100 Sobic001G303100 Sobic010G019000--Sobic001G303100 Sobic001G214100 Sobic001G214100 Sobic010G019000--Sobic001G214100 Sobic009G038900 Sobic009G038900 Sobic010G019000--Sobic009G038900 Sobic001G534700 Sobic001G534700 Sobic003G198800--Sobic001G534700 Sobic009G074400 Sobic009G074400 Sobic003G198800--Sobic009G074400 Sobic003G275700 Sobic003G275700 Sobic003G198800--Sobic003G275700 Sobic006G257800 Sobic006G257800 Sobic003G198800--Sobic006G257800 Sobic003G155100 Sobic003G155100 Sobic003G198800--Sobic003G155100 Sobic003G198800--Sobic001G128300 Sobic003G198800--Sobic001G481900 Sobic008G151100 Sobic008G151100 Sobic003G198800--Sobic008G151100 Sobic002G411600 Sobic002G411600 Sobic003G198800--Sobic002G411600 Sobic001G381600--Sobic008G151100 Sobic009G201300 Sobic009G201300 Sobic001G381600--Sobic009G201300 Sobic007G198300 Sobic007G198300 Sobic001G381600--Sobic007G198300 Sobic006G002300 Sobic006G002300 Sobic001G381600--Sobic006G002300 Sobic003G115900 Sobic003G115900 Sobic001G381600--Sobic003G115900 Sobic001G212300 Sobic001G212300 Sobic001G381600--Sobic001G212300 Sobic001G381600--Sobic009G038900 Sobic001G381600--Sobic003G198800 Sobic001G381600--Sobic003G155100 Sobic009G200800 Sobic009G200800 Sobic008G152600--Sobic009G200800 Sobic001G446200 Sobic001G446200 Sobic008G152600--Sobic001G446200 Sobic008G152600--Sobic008G047400 Sobic008G152600--Sobic003G242000 Sobic001G328200 Sobic001G328200 Sobic008G152600--Sobic001G328200 Sobic008G152600--Sobic003G051000 Sobic008G124900 Sobic008G124900 Sobic008G152600--Sobic008G124900 Sobic002G311100 Sobic002G311100 Sobic008G152600--Sobic002G311100 Sobic008G152600--Sobic007G164000 Sobic008G047400--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic008G047400--Sobic010G278200 Sobic006G033200 Sobic006G033200 Sobic008G047400--Sobic006G033200 Sobic004G202500 Sobic004G202500 Sobic008G047400--Sobic004G202500 Sobic003G302900 Sobic003G302900 Sobic008G047400--Sobic003G302900 Sobic010G074300 Sobic010G074300 Sobic008G047400--Sobic010G074300 Sobic004G255700 Sobic004G255700 Sobic008G047400--Sobic004G255700 Sobic010G147100 Sobic010G147100 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic003G242000--Sobic003G198800 Sobic002G262300 Sobic002G262300 Sobic003G242000--Sobic002G262300 Sobic003G242000--Sobic003G115900 Sobic002G383600 Sobic002G383600 Sobic003G242000--Sobic002G383600 Sobic003G242000--Sobic001G064200 Sobic003G242000--Sobic008G152600 Sobic001G409300 Sobic001G409300 Sobic003G242000--Sobic001G409300 Sobic003G242000--Sobic008G059100 Sobic003G242000--Sobic006G002300 Sobic004G312600 Sobic004G312600 Sobic001G064200--Sobic004G312600 Sobic001G064200--Sobic010G074300 Sobic003G191700 Sobic003G191700 Sobic001G064200--Sobic003G191700 Sobic001G064200--Sobic006G257800 Sobic001G064200--Sobic004G281800 Sobic010G251300 Sobic010G251300 Sobic001G064200--Sobic010G251300 Sobic001G064200--Sobic003G198800 Sobic001G064200--Sobic006G002300 Sobic001G064200--Sobic008G151100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.