Gene annotation
Transcriptome id Sobic.001G475400.1
Synonym Sb01g044540, SORBIDRAFT_01g044540,SORBI_3001G475400
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
Leucine-rich repeat receptor (PubMedID : 31721651)
leucine rich repeat domain containing protein, putative, expressed
UniProt C5WUT8
Pfam PF13855
Panther DB PTHR24365 PTHR24365:SF368
NCBI CDD KOG0617; Ras suppressor protein (contains leucine-rich repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G78230 : Outer arm dynein light chain 1 protein
RAP-DB (Rice) LOC_Os03g09070.1 : leucine rich repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001035 , Zm00025a053217
Brachypodium PNT67289 , PNT67288 , KQK23196 , KQK23194 , KQK23195 , PNT78001 , PNT67290 , PNT67291 , PNT67292 , KQJ96494 , KQJ96495
Barley HORVU5Hr1G112710.6 , HORVU5Hr1G112710.5 , HORVU5Hr1G112710.4 , HORVU5Hr1G112710.3 , HORVU5Hr1G112710.2 , HORVU5Hr1G112710.1 , HORVU4Hr1G078540.12 , HORVU4Hr1G078540.13 , HORVU4Hr1G078540.10 , HORVU4Hr1G078540.11 , HORVU4Hr1G078540.18 , HORVU4Hr1G078540.4 , HORVU4Hr1G078540.5 , HORVU4Hr1G078540.6 , HORVU4Hr1G078540.7 , HORVU4Hr1G078540.1 , HORVU4Hr1G078540.2 , HORVU4Hr1G078540.3 , HORVU4Hr1G078540.8 , HORVU4Hr1G078540.9 , HORVU5Hr1G112750.2 , HORVU5Hr1G112750.1 , HORVU4Hr1G078540.16 , HORVU4Hr1G078540.17 , HORVU4Hr1G078540.14 , HORVU4Hr1G078540.15
Wheat TraesCS4D02G304100 , TraesCS4B02G305900 , TraesCS5D02G489200 , TraesCS5D02G489200 , TraesCS4A02G406400 , TraesCS5B02G489100 , TraesCS5B02G489100 , TraesCS5B02G489100 , TraesCS7D02G125400 , TraesCS5D02G489200
Populus -


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cDNA sequences
Sobic.001G475400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G183101 - -
2 Sobic.005G150350 - -
3 Sobic.003G354900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulator of chromosome condensation, putative, expressed -
4 Sobic.002G229600 - -
5 Sobic.001G426800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, expressed -
6 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
7 Sobic.010G025850 - -
8 Sobic.001G037150 - -
9 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
10 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
11 Sobic.003G298600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor, putative, expressed -
12 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
13 Sobic.010G272200 leucine zipper protein-like, putative, expressed -
14 Sobic.003G425500 Calcium-binding protein(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML10 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
15 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
16 Sobic.004G211900 "Significantly enhanced the expression levels by drought stress, up-regulated by silicon application under drought stress "(PubMedID : 24813726)@S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed K01611: speD, S-adenosylmethionine decarboxylase
17 Sobic.003G397500 expressed protein -
18 Sobic.007G164000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
19 Sobic.009G000801 - -
20 Sobic.001G390200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -


Gene co-expression network
sample Sobic001G475400 Sobic001G475400 Sobic009G183101 Sobic009G183101 Sobic001G475400--Sobic009G183101 Sobic005G150350 Sobic005G150350 Sobic001G475400--Sobic005G150350 Sobic003G354900 Sobic003G354900 Sobic001G475400--Sobic003G354900 Sobic002G229600 Sobic002G229600 Sobic001G475400--Sobic002G229600 Sobic001G426800 Sobic001G426800 Sobic001G475400--Sobic001G426800 Sobic009G069300 Sobic009G069300 Sobic001G475400--Sobic009G069300 Sobic010G025850 Sobic010G025850 Sobic001G475400--Sobic010G025850 Sobic001G037150 Sobic001G037150 Sobic001G475400--Sobic001G037150 Sobic001G409300 Sobic001G409300 Sobic001G475400--Sobic001G409300 Sobic009G183101--Sobic001G426800 Sobic009G183101--Sobic009G069300 Sobic004G276200 Sobic004G276200 Sobic009G183101--Sobic004G276200 Sobic004G315600 Sobic004G315600 Sobic009G183101--Sobic004G315600 Sobic002G417300 Sobic002G417300 Sobic009G183101--Sobic002G417300 Sobic003G339700 Sobic003G339700 Sobic009G183101--Sobic003G339700 Sobic004G323400 Sobic004G323400 Sobic009G183101--Sobic004G323400 Sobic009G195800 Sobic009G195800 Sobic009G183101--Sobic009G195800 Sobic010G090301 Sobic010G090301 Sobic009G183101--Sobic010G090301 Sobic005G221250 Sobic005G221250 Sobic005G150350--Sobic005G221250 Sobic008G187632 Sobic008G187632 Sobic005G150350--Sobic008G187632 Sobic010G262500 Sobic010G262500 Sobic005G150350--Sobic010G262500 Sobic003G160100 Sobic003G160100 Sobic005G150350--Sobic003G160100 Sobic010G020800 Sobic010G020800 Sobic005G150350--Sobic010G020800 Sobic001G352400 Sobic001G352400 Sobic005G150350--Sobic001G352400 Sobic001G298700 Sobic001G298700 Sobic005G150350--Sobic001G298700 Sobic004G006800 Sobic004G006800 Sobic005G150350--Sobic004G006800 Sobic002G383600 Sobic002G383600 Sobic005G150350--Sobic002G383600 Sobic001G446200 Sobic001G446200 Sobic003G354900--Sobic001G446200 Sobic003G425500 Sobic003G425500 Sobic003G354900--Sobic003G425500 Sobic009G190700 Sobic009G190700 Sobic003G354900--Sobic009G190700 Sobic010G019000 Sobic010G019000 Sobic003G354900--Sobic010G019000 Sobic001G390200 Sobic001G390200 Sobic003G354900--Sobic001G390200 Sobic003G354900--Sobic001G352400 Sobic001G391300 Sobic001G391300 Sobic003G354900--Sobic001G391300 Sobic004G219400 Sobic004G219400 Sobic003G354900--Sobic004G219400 Sobic008G152600 Sobic008G152600 Sobic003G354900--Sobic008G152600 Sobic003G252400 Sobic003G252400 Sobic002G229600--Sobic003G252400 Sobic004G211301 Sobic004G211301 Sobic002G229600--Sobic004G211301 Sobic002G013900 Sobic002G013900 Sobic002G229600--Sobic002G013900 Sobic003G397500 Sobic003G397500 Sobic002G229600--Sobic003G397500 Sobic003G066900 Sobic003G066900 Sobic002G229600--Sobic003G066900 Sobic004G257350 Sobic004G257350 Sobic002G229600--Sobic004G257350 Sobic003G233900 Sobic003G233900 Sobic002G229600--Sobic003G233900 Sobic002G331450 Sobic002G331450 Sobic002G229600--Sobic002G331450 Sobic002G189000 Sobic002G189000 Sobic002G229600--Sobic002G189000 Sobic001G426800--Sobic009G183101 Sobic001G426800--Sobic009G069300 Sobic001G426800--Sobic003G339700 Sobic009G180500 Sobic009G180500 Sobic001G426800--Sobic009G180500 Sobic001G426800--Sobic004G276200 Sobic009G200800 Sobic009G200800 Sobic001G426800--Sobic009G200800 Sobic006G150400 Sobic006G150400 Sobic001G426800--Sobic006G150400 Sobic001G426800--Sobic004G323400 Sobic003G313900 Sobic003G313900 Sobic001G426800--Sobic003G313900 Sobic009G069300--Sobic009G183101 Sobic009G069300--Sobic001G426800 Sobic009G069300--Sobic003G339700 Sobic009G069300--Sobic002G417300 Sobic009G069300--Sobic004G276200 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic002G368700 Sobic002G368700 Sobic009G069300--Sobic002G368700 Sobic009G069300--Sobic006G150400 Sobic002G034100 Sobic002G034100 Sobic010G025850--Sobic002G034100 Sobic001G128300 Sobic001G128300 Sobic010G025850--Sobic001G128300 Sobic004G306500 Sobic004G306500 Sobic010G025850--Sobic004G306500 Sobic010G141800 Sobic010G141800 Sobic010G025850--Sobic010G141800 Sobic001G100900 Sobic001G100900 Sobic010G025850--Sobic001G100900 Sobic003G362600 Sobic003G362600 Sobic010G025850--Sobic003G362600 Sobic004G091100 Sobic004G091100 Sobic010G025850--Sobic004G091100 Sobic003G115900 Sobic003G115900 Sobic010G025850--Sobic003G115900 Sobic009G161550 Sobic009G161550 Sobic010G025850--Sobic009G161550 Sobic001G095500 Sobic001G095500 Sobic001G037150--Sobic001G095500 Sobic010G260300 Sobic010G260300 Sobic001G037150--Sobic010G260300 Sobic007G131700 Sobic007G131700 Sobic001G037150--Sobic007G131700 Sobic001G037150--Sobic003G252400 Sobic002G225300 Sobic002G225300 Sobic001G037150--Sobic002G225300 Sobic001G037150--Sobic002G229600 Sobic004G155200 Sobic004G155200 Sobic001G037150--Sobic004G155200 Sobic001G005700 Sobic001G005700 Sobic001G037150--Sobic001G005700 Sobic001G112000 Sobic001G112000 Sobic001G037150--Sobic001G112000 Sobic008G059100 Sobic008G059100 Sobic001G409300--Sobic008G059100 Sobic004G211900 Sobic004G211900 Sobic001G409300--Sobic004G211900 Sobic003G242000 Sobic003G242000 Sobic001G409300--Sobic003G242000 Sobic001G217400 Sobic001G217400 Sobic001G409300--Sobic001G217400 Sobic010G272200 Sobic010G272200 Sobic001G409300--Sobic010G272200 Sobic003G051600 Sobic003G051600 Sobic001G409300--Sobic003G051600 Sobic003G269800 Sobic003G269800 Sobic001G409300--Sobic003G269800 Sobic001G409300--Sobic003G397500 Sobic009G136100 Sobic009G136100 Sobic001G409300--Sobic009G136100
Octagon: transcription factors


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