Gene annotation
Transcriptome id Sobic.004G211900.1
Synonym SAMDC04, S-adenosyl-Met decarboxylase, Sb04g025720
Functional annotation "Significantly enhanced the expression levels by drought stress, up-regulated by silicon application under drought stress " (PubMedID : 24813726)
S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed
UniProt U5XKD6 , C5XXB2
Pfam PF01536
Panther DB PTHR11570 PTHR11570:SF3
NCBI CDD KOG0788; S-adenosylmethionine decarboxylase
KEGG Orthology K01611; speD, S-adenosylmethionine decarboxylase
Gene Ontology GO:0008295; spermidine biosynthetic process GO:0006597spermine biosynthetic process GO:0004014adenosylmethionine decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G25570 : Adenosylmethionine decarboxylase family protein
RAP-DB (Rice) LOC_Os02g39790.1 : CPuORF9 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a031923
Brachypodium KQJ83381 , KQK00293
Barley HORVU6Hr1G056110.4 , HORVU6Hr1G056110.1 , HORVU6Hr1G056110.3 , HORVU6Hr1G056110.2 , HORVU2Hr1G086140.3 , HORVU2Hr1G086140.2 , HORVU2Hr1G086140.1 , HORVU2Hr1G086140.5 , HORVU2Hr1G086140.4
Wheat TraesCS6B02G249000 , TraesCS2D02G352900 , TraesCS2A02G355400
Populus -


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cDNA sequences
Sobic.004G211900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G211866 - -
2 Sobic.001G350900 OsFBO14 - F-box and other domain containing protein, expressed -
3 Sobic.001G409300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@phosphatidylinositol transfer protein alpha isoform, putative, expressed -
4 Sobic.001G217400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1336 domain containing protein, expressed -
5 Sobic.001G062300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
6 Sobic.007G210500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.003G269800 phosphatidylinositol transfer, putative, expressed -
8 Sobic.008G059100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.006G275100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
10 Sobic.010G227100 BTB/POZ domain containing protein, putative, expressed -
11 Sobic.001G440600 expressed protein -
12 Sobic.002G383600 zinc finger, C3HC4 type domain containing protein, expressed K12169: KPC1, Kip1 ubiquitination-promoting complex protein 1
13 Sobic.006G104600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.003G051600 universal stress protein domain containing protein, putative, expressed -
15 Sobic.009G183101 - -
16 Sobic.003G320700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G189200 OsFBK9 - F-box domain and kelch repeat containing protein, expressed -
18 Sobic.009G153000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@actin, putative, expressed K10355: actin, other eukaryote
19 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
20 Sobic.010G227300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic004G211900 Sobic004G211900 Sobic004G211866 Sobic004G211866 Sobic004G211900--Sobic004G211866 Sobic001G350900 Sobic001G350900 Sobic004G211900--Sobic001G350900 Sobic001G409300 Sobic001G409300 Sobic004G211900--Sobic001G409300 Sobic001G217400 Sobic001G217400 Sobic004G211900--Sobic001G217400 Sobic001G062300 Sobic001G062300 Sobic004G211900--Sobic001G062300 Sobic007G210500 Sobic007G210500 Sobic004G211900--Sobic007G210500 Sobic003G269800 Sobic003G269800 Sobic004G211900--Sobic003G269800 Sobic008G059100 Sobic008G059100 Sobic004G211900--Sobic008G059100 Sobic006G275100 Sobic006G275100 Sobic004G211900--Sobic006G275100 Sobic004G211866--Sobic004G211900 Sobic004G211866--Sobic001G062300 Sobic004G211866--Sobic001G350900 Sobic004G211866--Sobic001G217400 Sobic009G080400 Sobic009G080400 Sobic004G211866--Sobic009G080400 Sobic004G211866--Sobic007G210500 Sobic010G177400 Sobic010G177400 Sobic004G211866--Sobic010G177400 Sobic002G262300 Sobic002G262300 Sobic004G211866--Sobic002G262300 Sobic004G189200 Sobic004G189200 Sobic004G211866--Sobic004G189200 Sobic001G350900--Sobic004G211900 Sobic001G350900--Sobic001G217400 Sobic001G350900--Sobic004G211866 Sobic006G033200 Sobic006G033200 Sobic001G350900--Sobic006G033200 Sobic008G047400 Sobic008G047400 Sobic001G350900--Sobic008G047400 Sobic002G217400 Sobic002G217400 Sobic001G350900--Sobic002G217400 Sobic001G103200 Sobic001G103200 Sobic001G350900--Sobic001G103200 Sobic001G541100 Sobic001G541100 Sobic001G350900--Sobic001G541100 Sobic001G414500 Sobic001G414500 Sobic001G350900--Sobic001G414500 Sobic001G409300--Sobic008G059100 Sobic001G409300--Sobic004G211900 Sobic003G242000 Sobic003G242000 Sobic001G409300--Sobic003G242000 Sobic001G409300--Sobic001G217400 Sobic010G272200 Sobic010G272200 Sobic001G409300--Sobic010G272200 Sobic003G051600 Sobic003G051600 Sobic001G409300--Sobic003G051600 Sobic001G409300--Sobic003G269800 Sobic003G397500 Sobic003G397500 Sobic001G409300--Sobic003G397500 Sobic009G136100 Sobic009G136100 Sobic001G409300--Sobic009G136100 Sobic010G072400 Sobic010G072400 Sobic001G217400--Sobic010G072400 Sobic001G217400--Sobic001G350900 Sobic001G350700 Sobic001G350700 Sobic001G217400--Sobic001G350700 Sobic001G217400--Sobic004G211900 Sobic001G217400--Sobic003G269800 Sobic003G320700 Sobic003G320700 Sobic001G217400--Sobic003G320700 Sobic001G217400--Sobic007G210500 Sobic003G101850 Sobic003G101850 Sobic001G217400--Sobic003G101850 Sobic006G271200 Sobic006G271200 Sobic001G217400--Sobic006G271200 Sobic006G257800 Sobic006G257800 Sobic001G062300--Sobic006G257800 Sobic001G062300--Sobic004G189200 Sobic001G062300--Sobic006G275100 Sobic008G167600 Sobic008G167600 Sobic001G062300--Sobic008G167600 Sobic007G190000 Sobic007G190000 Sobic001G062300--Sobic007G190000 Sobic001G062300--Sobic004G211866 Sobic003G301500 Sobic003G301500 Sobic001G062300--Sobic003G301500 Sobic010G272800 Sobic010G272800 Sobic001G062300--Sobic010G272800 Sobic002G383600 Sobic002G383600 Sobic001G062300--Sobic002G383600 Sobic001G282600 Sobic001G282600 Sobic007G210500--Sobic001G282600 Sobic007G210500--Sobic002G262300 Sobic007G210500--Sobic009G080400 Sobic010G169000 Sobic010G169000 Sobic007G210500--Sobic010G169000 Sobic001G305500 Sobic001G305500 Sobic007G210500--Sobic001G305500 Sobic007G210500--Sobic003G051600 Sobic006G104600 Sobic006G104600 Sobic007G210500--Sobic006G104600 Sobic007G210500--Sobic001G217400 Sobic004G225200 Sobic004G225200 Sobic007G210500--Sobic004G225200 Sobic009G118600 Sobic009G118600 Sobic003G269800--Sobic009G118600 Sobic003G269800--Sobic001G217400 Sobic004G124500 Sobic004G124500 Sobic003G269800--Sobic004G124500 Sobic003G269800--Sobic001G409300 Sobic007G056600 Sobic007G056600 Sobic003G269800--Sobic007G056600 Sobic003G126300 Sobic003G126300 Sobic003G269800--Sobic003G126300 Sobic001G399800 Sobic001G399800 Sobic003G269800--Sobic001G399800 Sobic003G269800--Sobic004G211900 Sobic003G281900 Sobic003G281900 Sobic003G269800--Sobic003G281900 Sobic001G488700 Sobic001G488700 Sobic008G059100--Sobic001G488700 Sobic002G187700 Sobic002G187700 Sobic008G059100--Sobic002G187700 Sobic008G059100--Sobic001G409300 Sobic001G481900 Sobic001G481900 Sobic008G059100--Sobic001G481900 Sobic004G233200 Sobic004G233200 Sobic008G059100--Sobic004G233200 Sobic003G302800 Sobic003G302800 Sobic008G059100--Sobic003G302800 Sobic009G190700 Sobic009G190700 Sobic008G059100--Sobic009G190700 Sobic007G164000 Sobic007G164000 Sobic008G059100--Sobic007G164000 Sobic010G262500 Sobic010G262500 Sobic008G059100--Sobic010G262500 Sobic010G227100 Sobic010G227100 Sobic006G275100--Sobic010G227100 Sobic006G275100--Sobic006G257800 Sobic006G275100--Sobic001G062300 Sobic006G275100--Sobic002G383600 Sobic006G275100--Sobic004G189200 Sobic003G372500 Sobic003G372500 Sobic006G275100--Sobic003G372500 Sobic003G198800 Sobic003G198800 Sobic006G275100--Sobic003G198800 Sobic006G275100--Sobic001G481900 Sobic001G214100 Sobic001G214100 Sobic006G275100--Sobic001G214100
Octagon: transcription factors


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