Gene annotation
Transcriptome id Sobic.003G425500.1
Synonym Sb03g045770,
Functional annotation Calcium-binding protein (PubMedID : 24906815)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsCML10 - Calmodulin-related calcium sensor protein, expressed
UniProt C5XHV0
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF581
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G24620 : EF hand calcium-binding protein family
RAP-DB (Rice) LOC_Os01g72100.1 : OsCML10 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a026003 , Zm00025a037090 , Zm00025a043513
Brachypodium KQJ89557 , KQK11527 , KQK06570
Barley HORVU3Hr1G107090.2 , HORVU3Hr1G107090.3 , HORVU1Hr1G057410.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G425500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G354900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulator of chromosome condensation, putative, expressed -
2 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
3 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
4 Sobic.009G195800 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K07198: PRKAA, 5'-AMP-activated protein kinase, catalytic alpha subunit
5 Sobic.001G333600 membrane-anchored ubiquitin-fold protein, putative, expressed -
6 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
7 Sobic.003G350800 SLT1 protein, putative, expressed -
8 Sobic.007G160200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@mitochondrial carrier protein, putative, expressed K15104: SLC25A11, solute carrier family 25 (mitochondrial oxoglutarate transporter), member 11
9 Sobic.009G183101 - -
10 Sobic.006G150400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.007G140900 similar to Putative uncharacterized protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.004G276200 peptide transporter PTR2, putative, expressed -
13 Sobic.001G523200 CBL-interacting protein kinase 9(PubMedID : 26465154)@CBL-interacting protein kinase 9(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.15 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
14 Sobic.009G246300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
15 Sobic.003G334000 expressed protein -
16 Sobic.002G368700 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.003G406000 OsFBO2 - F-box and other domain containing protein, expressed -
18 Sobic.003G032500 - -
19 Sobic.004G332100 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G446200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@clathrin adaptor complex small chain domain containing protein, expressed K12399: AP-3 complex subunit sigma


Gene co-expression network
sample Sobic003G425500 Sobic003G425500 Sobic003G354900 Sobic003G354900 Sobic003G425500--Sobic003G354900 Sobic009G069300 Sobic009G069300 Sobic003G425500--Sobic009G069300 Sobic003G339700 Sobic003G339700 Sobic003G425500--Sobic003G339700 Sobic009G195800 Sobic009G195800 Sobic003G425500--Sobic009G195800 Sobic001G333600 Sobic001G333600 Sobic003G425500--Sobic001G333600 Sobic001G391300 Sobic001G391300 Sobic003G425500--Sobic001G391300 Sobic003G350800 Sobic003G350800 Sobic003G425500--Sobic003G350800 Sobic007G160200 Sobic007G160200 Sobic003G425500--Sobic007G160200 Sobic009G183101 Sobic009G183101 Sobic003G425500--Sobic009G183101 Sobic001G446200 Sobic001G446200 Sobic003G354900--Sobic001G446200 Sobic003G354900--Sobic003G425500 Sobic009G190700 Sobic009G190700 Sobic003G354900--Sobic009G190700 Sobic010G019000 Sobic010G019000 Sobic003G354900--Sobic010G019000 Sobic001G390200 Sobic001G390200 Sobic003G354900--Sobic001G390200 Sobic001G352400 Sobic001G352400 Sobic003G354900--Sobic001G352400 Sobic003G354900--Sobic001G391300 Sobic004G219400 Sobic004G219400 Sobic003G354900--Sobic004G219400 Sobic008G152600 Sobic008G152600 Sobic003G354900--Sobic008G152600 Sobic009G069300--Sobic009G183101 Sobic001G426800 Sobic001G426800 Sobic009G069300--Sobic001G426800 Sobic009G069300--Sobic003G339700 Sobic002G417300 Sobic002G417300 Sobic009G069300--Sobic002G417300 Sobic004G276200 Sobic004G276200 Sobic009G069300--Sobic004G276200 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic002G368700 Sobic002G368700 Sobic009G069300--Sobic002G368700 Sobic006G150400 Sobic006G150400 Sobic009G069300--Sobic006G150400 Sobic003G339700--Sobic002G417300 Sobic003G381700 Sobic003G381700 Sobic003G339700--Sobic003G381700 Sobic008G187100 Sobic008G187100 Sobic003G339700--Sobic008G187100 Sobic007G146400 Sobic007G146400 Sobic003G339700--Sobic007G146400 Sobic001G160800 Sobic001G160800 Sobic003G339700--Sobic001G160800 Sobic003G334000 Sobic003G334000 Sobic003G339700--Sobic003G334000 Sobic001G057700 Sobic001G057700 Sobic003G339700--Sobic001G057700 Sobic003G339700--Sobic009G069300 Sobic006G066800 Sobic006G066800 Sobic003G339700--Sobic006G066800 Sobic003G066900 Sobic003G066900 Sobic009G195800--Sobic003G066900 Sobic003G233900 Sobic003G233900 Sobic009G195800--Sobic003G233900 Sobic004G283201 Sobic004G283201 Sobic009G195800--Sobic004G283201 Sobic003G373150 Sobic003G373150 Sobic009G195800--Sobic003G373150 Sobic006G267900 Sobic006G267900 Sobic009G195800--Sobic006G267900 Sobic004G285100 Sobic004G285100 Sobic009G195800--Sobic004G285100 Sobic010G260300 Sobic010G260300 Sobic009G195800--Sobic010G260300 Sobic002G189000 Sobic002G189000 Sobic009G195800--Sobic002G189000 Sobic004G283300 Sobic004G283300 Sobic009G195800--Sobic004G283300 Sobic002G358800 Sobic002G358800 Sobic001G333600--Sobic002G358800 Sobic001G333600--Sobic003G350800 Sobic008G047400 Sobic008G047400 Sobic001G333600--Sobic008G047400 Sobic010G251300 Sobic010G251300 Sobic001G333600--Sobic010G251300 Sobic009G200800 Sobic009G200800 Sobic001G333600--Sobic009G200800 Sobic009G231200 Sobic009G231200 Sobic001G333600--Sobic009G231200 Sobic009G066900 Sobic009G066900 Sobic001G333600--Sobic009G066900 Sobic002G217700 Sobic002G217700 Sobic001G333600--Sobic002G217700 Sobic003G309200 Sobic003G309200 Sobic001G333600--Sobic003G309200 Sobic004G097300 Sobic004G097300 Sobic001G391300--Sobic004G097300 Sobic001G391300--Sobic004G276200 Sobic002G086800 Sobic002G086800 Sobic001G391300--Sobic002G086800 Sobic006G220200 Sobic006G220200 Sobic001G391300--Sobic006G220200 Sobic001G391300--Sobic004G332100 Sobic001G391300--Sobic003G339700 Sobic001G087700 Sobic001G087700 Sobic001G391300--Sobic001G087700 Sobic001G470900 Sobic001G470900 Sobic001G391300--Sobic001G470900 Sobic001G391300--Sobic009G183101 Sobic009G246300 Sobic009G246300 Sobic003G350800--Sobic009G246300 Sobic003G350800--Sobic001G333600 Sobic003G350800--Sobic010G251300 Sobic003G043300 Sobic003G043300 Sobic003G350800--Sobic003G043300 Sobic003G350800--Sobic002G358800 Sobic001G221800 Sobic001G221800 Sobic003G350800--Sobic001G221800 Sobic002G290400 Sobic002G290400 Sobic003G350800--Sobic002G290400 Sobic010G230500 Sobic010G230500 Sobic003G350800--Sobic010G230500 Sobic008G077500 Sobic008G077500 Sobic003G350800--Sobic008G077500 Sobic007G140900 Sobic007G140900 Sobic007G160200--Sobic007G140900 Sobic007G160200--Sobic004G332100 Sobic007G160200--Sobic001G087700 Sobic009G037800 Sobic009G037800 Sobic007G160200--Sobic009G037800 Sobic007G160200--Sobic001G391300 Sobic002G184600 Sobic002G184600 Sobic007G160200--Sobic002G184600 Sobic001G523200 Sobic001G523200 Sobic007G160200--Sobic001G523200 Sobic003G238000 Sobic003G238000 Sobic007G160200--Sobic003G238000 Sobic007G160200--Sobic009G195800 Sobic009G183101--Sobic001G426800 Sobic009G183101--Sobic009G069300 Sobic009G183101--Sobic004G276200 Sobic004G315600 Sobic004G315600 Sobic009G183101--Sobic004G315600 Sobic009G183101--Sobic002G417300 Sobic009G183101--Sobic003G339700 Sobic004G323400 Sobic004G323400 Sobic009G183101--Sobic004G323400 Sobic009G183101--Sobic009G195800 Sobic010G090301 Sobic010G090301 Sobic009G183101--Sobic010G090301
Octagon: transcription factors


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