Gene annotation
Transcriptome id Sobic.002G368700.1
Synonym AP1, AGL7, Sb02g038780
Functional annotation OsMADS18 - MADS-box family gene with MIKCc type-box, expressed
UniProt C5XDW7
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF155
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G69120 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os07g41370.1 : OsMADS18 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a016241 , Zm00025a032331 , Zm00025a031749 , Zm00025a026557 , Zm00025a047585 , Zm00025a005260 , Zm00025a005261 , Zm00025a008189 , Zm00025a014307 , Zm00025a016785 , Zm00025a048701 , Zm00025a044893
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQJ98794 , KQK19480 , KQK16273
Barley HORVU3Hr1G091000.3 , HORVU3Hr1G091000.2 , HORVU3Hr1G091000.1 , HORVU3Hr1G091000.7 , HORVU3Hr1G091000.6 , HORVU3Hr1G091000.5 , HORVU3Hr1G091000.4 , HORVU3Hr1G091000.9 , HORVU3Hr1G091000.8 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU3Hr1G091000.13 , HORVU3Hr1G091000.12 , HORVU3Hr1G091000.11 , HORVU3Hr1G091000.10 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS3A02G406500 , TraesCS3A02G406500 , TraesCS7B02G158600 , TraesCS6D02G014600 , TraesCS4D02G021100 , TraesCS4B02G023300 , TraesCS3B02G440200 , TraesCS3D02G401700 , TraesCS3D02G401700 , TraesCS3B02G440200 , TraesCS3B02G440200 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G069300 actin binding protein family(PubMedID : 26465154)@AR791, putative, expressed -
2 Sobic.001G059200 OsFBX171 - F-box domain containing protein, expressed -
3 Sobic.001G174800 programmed cell death protein 2, putative, expressed K14801: pre-rRNA-processing protein TSR4
4 Sobic.005G150350 - -
5 Sobic.009G120600 expressed protein -
6 Sobic.007G099200 expressed protein -
7 Sobic.001G310100 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
8 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
9 Sobic.003G107500 expressed protein K10841: ERCC6, CSB, DNA excision repair protein ERCC-6
10 Sobic.002G417300 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.003G373500 phosphatidylinositol-4-phosphate 5-Kinase, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
12 Sobic.003G339700 Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
13 Sobic.002G419600 cytochrome P450, putative, expressed -
14 Sobic.002G196200 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
15 Sobic.003G425500 Calcium-binding protein(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML10 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
16 Sobic.002G079000 expressed protein -
17 Sobic.010G007300 hydrolase activity(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase activity(PubMedID : 24655390)@haloacid dehalogenase-like hydrolase family protein, putative, expressed -
18 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
19 Sobic.010G226000 expressed protein -
20 Sobic.002G321300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pleiotropic drug resistance protein, putative, expressed -


Gene co-expression network
sample Sobic002G368700 Sobic002G368700 Sobic009G069300 Sobic009G069300 Sobic002G368700--Sobic009G069300 Sobic001G059200 Sobic001G059200 Sobic002G368700--Sobic001G059200 Sobic001G174800 Sobic001G174800 Sobic002G368700--Sobic001G174800 Sobic005G150350 Sobic005G150350 Sobic002G368700--Sobic005G150350 Sobic009G120600 Sobic009G120600 Sobic002G368700--Sobic009G120600 Sobic007G099200 Sobic007G099200 Sobic002G368700--Sobic007G099200 Sobic001G310100 Sobic001G310100 Sobic002G368700--Sobic001G310100 Sobic003G403300 Sobic003G403300 Sobic002G368700--Sobic003G403300 Sobic003G107500 Sobic003G107500 Sobic002G368700--Sobic003G107500 Sobic009G183101 Sobic009G183101 Sobic009G069300--Sobic009G183101 Sobic001G426800 Sobic001G426800 Sobic009G069300--Sobic001G426800 Sobic003G339700 Sobic003G339700 Sobic009G069300--Sobic003G339700 Sobic002G417300 Sobic002G417300 Sobic009G069300--Sobic002G417300 Sobic004G276200 Sobic004G276200 Sobic009G069300--Sobic004G276200 Sobic003G425500 Sobic003G425500 Sobic009G069300--Sobic003G425500 Sobic004G332100 Sobic004G332100 Sobic009G069300--Sobic004G332100 Sobic009G069300--Sobic002G368700 Sobic006G150400 Sobic006G150400 Sobic009G069300--Sobic006G150400 Sobic001G059200--Sobic007G099200 Sobic001G059200--Sobic002G368700 Sobic005G126600 Sobic005G126600 Sobic001G059200--Sobic005G126600 Sobic010G226000 Sobic010G226000 Sobic001G059200--Sobic010G226000 Sobic007G223000 Sobic007G223000 Sobic001G059200--Sobic007G223000 Sobic005G201000 Sobic005G201000 Sobic001G059200--Sobic005G201000 Sobic005G143900 Sobic005G143900 Sobic001G059200--Sobic005G143900 Sobic002G211800 Sobic002G211800 Sobic001G059200--Sobic002G211800 Sobic001G128300 Sobic001G128300 Sobic001G059200--Sobic001G128300 Sobic007G182000 Sobic007G182000 Sobic001G174800--Sobic007G182000 Sobic010G134000 Sobic010G134000 Sobic001G174800--Sobic010G134000 Sobic003G433400 Sobic003G433400 Sobic001G174800--Sobic003G433400 Sobic001G174800--Sobic002G368700 Sobic003G010800 Sobic003G010800 Sobic001G174800--Sobic003G010800 Sobic004G089300 Sobic004G089300 Sobic001G174800--Sobic004G089300 Sobic009G217400 Sobic009G217400 Sobic001G174800--Sobic009G217400 Sobic002G165700 Sobic002G165700 Sobic001G174800--Sobic002G165700 Sobic006G250800 Sobic006G250800 Sobic001G174800--Sobic006G250800 Sobic005G221250 Sobic005G221250 Sobic005G150350--Sobic005G221250 Sobic008G187632 Sobic008G187632 Sobic005G150350--Sobic008G187632 Sobic010G262500 Sobic010G262500 Sobic005G150350--Sobic010G262500 Sobic003G160100 Sobic003G160100 Sobic005G150350--Sobic003G160100 Sobic010G020800 Sobic010G020800 Sobic005G150350--Sobic010G020800 Sobic001G352400 Sobic001G352400 Sobic005G150350--Sobic001G352400 Sobic001G298700 Sobic001G298700 Sobic005G150350--Sobic001G298700 Sobic004G006800 Sobic004G006800 Sobic005G150350--Sobic004G006800 Sobic002G383600 Sobic002G383600 Sobic005G150350--Sobic002G383600 Sobic002G419600 Sobic002G419600 Sobic009G120600--Sobic002G419600 Sobic001G414100 Sobic001G414100 Sobic009G120600--Sobic001G414100 Sobic002G290100 Sobic002G290100 Sobic009G120600--Sobic002G290100 Sobic004G098800 Sobic004G098800 Sobic009G120600--Sobic004G098800 Sobic010G253400 Sobic010G253400 Sobic009G120600--Sobic010G253400 Sobic003G405600 Sobic003G405600 Sobic009G120600--Sobic003G405600 Sobic004G278700 Sobic004G278700 Sobic009G120600--Sobic004G278700 Sobic003G141600 Sobic003G141600 Sobic009G120600--Sobic003G141600 Sobic003G377500 Sobic003G377500 Sobic009G120600--Sobic003G377500 Sobic003G119700 Sobic003G119700 Sobic007G099200--Sobic003G119700 Sobic007G099200--Sobic001G310100 Sobic007G099200--Sobic007G223000 Sobic009G066900 Sobic009G066900 Sobic007G099200--Sobic009G066900 Sobic010G014100 Sobic010G014100 Sobic007G099200--Sobic010G014100 Sobic008G124900 Sobic008G124900 Sobic007G099200--Sobic008G124900 Sobic007G099200--Sobic001G059200 Sobic003G150100 Sobic003G150100 Sobic007G099200--Sobic003G150100 Sobic002G358400 Sobic002G358400 Sobic007G099200--Sobic002G358400 Sobic001G310100--Sobic003G107500 Sobic001G310100--Sobic010G014100 Sobic001G310100--Sobic010G226000 Sobic002G196200 Sobic002G196200 Sobic001G310100--Sobic002G196200 Sobic001G310100--Sobic007G099200 Sobic003G298200 Sobic003G298200 Sobic001G310100--Sobic003G298200 Sobic002G043800 Sobic002G043800 Sobic001G310100--Sobic002G043800 Sobic001G310100--Sobic003G119700 Sobic003G150500 Sobic003G150500 Sobic001G310100--Sobic003G150500 Sobic002G310900 Sobic002G310900 Sobic003G403300--Sobic002G310900 Sobic003G403300--Sobic003G010800 Sobic002G307800 Sobic002G307800 Sobic003G403300--Sobic002G307800 Sobic002G098900 Sobic002G098900 Sobic003G403300--Sobic002G098900 Sobic002G407000 Sobic002G407000 Sobic003G403300--Sobic002G407000 Sobic003G403300--Sobic010G134000 Sobic001G067700 Sobic001G067700 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G198900 Sobic003G198900 Sobic003G403300--Sobic003G198900 Sobic004G001500 Sobic004G001500 Sobic003G107500--Sobic004G001500 Sobic003G107500--Sobic002G043800 Sobic003G107500--Sobic002G383600 Sobic003G107500--Sobic001G310100 Sobic004G146600 Sobic004G146600 Sobic003G107500--Sobic004G146600 Sobic003G107500--Sobic003G298200 Sobic003G373500 Sobic003G373500 Sobic003G107500--Sobic003G373500 Sobic005G187300 Sobic005G187300 Sobic003G107500--Sobic005G187300 Sobic003G107500--Sobic010G014100
Octagon: transcription factors


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