Gene annotation
Transcriptome id Sobic.001G174800.2
Synonym Sb01g015195
Functional annotation programmed cell death protein 2, putative, expressed
UniProt A0A1Z5S659
Pfam PF01753 PF04194
Panther DB PTHR12298 PTHR12298:SF26
NCBI CDD KOG2061; Uncharacterized MYND Zn-finger protein
KEGG Orthology K14801; pre-rRNA-processing protein TSR4
Gene Ontology GO:0005737; cytoplasm


Orthologs (automatic annotation)
TAIR AT4G02220 : zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein
RAP-DB (Rice) LOC_Os01g39650.1 : programmed cell death protein 2, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus PNT50712 , PNT50711


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G182000 hydroxymethylglutaryl-CoA synthase("PubMedID : 26759170,PubMedID : 24597475")@hydroxymethylglutaryl-CoA synthase, putative, expressed K01641: hydroxymethylglutaryl-CoA synthase
2 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
3 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
4 Sobic.002G368700 OsMADS18 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
6 Sobic.004G089300 ABC transporter, ATP-binding protein, putative, expressed -
7 Sobic.009G217400 regulator of chromosome condensation, putative, expressed -
8 Sobic.002G165700 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
11 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
12 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
13 Sobic.010G244300 - -
14 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
15 Sobic.002G079000 expressed protein -
16 Sobic.009G124600 integral membrane transporter family protein, putative, expressed -
17 Sobic.004G113000 - -
18 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase
19 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
20 Sobic.007G004300 phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed -


Gene co-expression network
sample Sobic001G174800 Sobic001G174800 Sobic007G182000 Sobic007G182000 Sobic001G174800--Sobic007G182000 Sobic010G134000 Sobic010G134000 Sobic001G174800--Sobic010G134000 Sobic003G433400 Sobic003G433400 Sobic001G174800--Sobic003G433400 Sobic002G368700 Sobic002G368700 Sobic001G174800--Sobic002G368700 Sobic003G010800 Sobic003G010800 Sobic001G174800--Sobic003G010800 Sobic004G089300 Sobic004G089300 Sobic001G174800--Sobic004G089300 Sobic009G217400 Sobic009G217400 Sobic001G174800--Sobic009G217400 Sobic002G165700 Sobic002G165700 Sobic001G174800--Sobic002G165700 Sobic006G250800 Sobic006G250800 Sobic001G174800--Sobic006G250800 Sobic007G182000--Sobic009G217400 Sobic003G365100 Sobic003G365100 Sobic007G182000--Sobic003G365100 Sobic001G253300 Sobic001G253300 Sobic007G182000--Sobic001G253300 Sobic007G182000--Sobic006G250800 Sobic007G087000 Sobic007G087000 Sobic007G182000--Sobic007G087000 Sobic002G057400 Sobic002G057400 Sobic007G182000--Sobic002G057400 Sobic007G182000--Sobic003G433400 Sobic003G243800 Sobic003G243800 Sobic007G182000--Sobic003G243800 Sobic001G257800 Sobic001G257800 Sobic007G182000--Sobic001G257800 Sobic010G134000--Sobic003G010800 Sobic010G134000--Sobic003G433400 Sobic003G403300 Sobic003G403300 Sobic010G134000--Sobic003G403300 Sobic002G310900 Sobic002G310900 Sobic010G134000--Sobic002G310900 Sobic002G407000 Sobic002G407000 Sobic010G134000--Sobic002G407000 Sobic001G411200 Sobic001G411200 Sobic010G134000--Sobic001G411200 Sobic003G291800 Sobic003G291800 Sobic010G134000--Sobic003G291800 Sobic001G178100 Sobic001G178100 Sobic010G134000--Sobic001G178100 Sobic006G270000 Sobic006G270000 Sobic010G134000--Sobic006G270000 Sobic003G433400--Sobic006G270000 Sobic003G433400--Sobic009G217400 Sobic003G433400--Sobic003G010800 Sobic003G433400--Sobic003G291800 Sobic005G048500 Sobic005G048500 Sobic003G433400--Sobic005G048500 Sobic003G235100 Sobic003G235100 Sobic003G433400--Sobic003G235100 Sobic003G092800 Sobic003G092800 Sobic003G433400--Sobic003G092800 Sobic002G069000 Sobic002G069000 Sobic003G433400--Sobic002G069000 Sobic002G084800 Sobic002G084800 Sobic003G433400--Sobic002G084800 Sobic009G069300 Sobic009G069300 Sobic002G368700--Sobic009G069300 Sobic001G059200 Sobic001G059200 Sobic002G368700--Sobic001G059200 Sobic002G368700--Sobic001G174800 Sobic005G150350 Sobic005G150350 Sobic002G368700--Sobic005G150350 Sobic009G120600 Sobic009G120600 Sobic002G368700--Sobic009G120600 Sobic007G099200 Sobic007G099200 Sobic002G368700--Sobic007G099200 Sobic001G310100 Sobic001G310100 Sobic002G368700--Sobic001G310100 Sobic002G368700--Sobic003G403300 Sobic003G107500 Sobic003G107500 Sobic002G368700--Sobic003G107500 Sobic003G010800--Sobic010G134000 Sobic003G010800--Sobic006G270000 Sobic003G010800--Sobic002G310900 Sobic003G010800--Sobic003G433400 Sobic003G010800--Sobic003G403300 Sobic010G149800 Sobic010G149800 Sobic003G010800--Sobic010G149800 Sobic010G105000 Sobic010G105000 Sobic003G010800--Sobic010G105000 Sobic003G010800--Sobic003G291800 Sobic002G307800 Sobic002G307800 Sobic003G010800--Sobic002G307800 Sobic010G244300 Sobic010G244300 Sobic004G089300--Sobic010G244300 Sobic004G089300--Sobic010G149800 Sobic004G089300--Sobic003G010800 Sobic002G103800 Sobic002G103800 Sobic004G089300--Sobic002G103800 Sobic004G089300--Sobic010G134000 Sobic007G099900 Sobic007G099900 Sobic004G089300--Sobic007G099900 Sobic003G278600 Sobic003G278600 Sobic004G089300--Sobic003G278600 Sobic004G089300--Sobic006G270000 Sobic010G136950 Sobic010G136950 Sobic004G089300--Sobic010G136950 Sobic009G217400--Sobic007G182000 Sobic009G217400--Sobic006G250800 Sobic009G217400--Sobic002G307800 Sobic009G217400--Sobic003G433400 Sobic009G116900 Sobic009G116900 Sobic009G217400--Sobic009G116900 Sobic009G217400--Sobic003G092800 Sobic009G217400--Sobic001G253300 Sobic009G217400--Sobic001G257800 Sobic002G180800 Sobic002G180800 Sobic009G217400--Sobic002G180800 Sobic002G060400 Sobic002G060400 Sobic002G165700--Sobic002G060400 Sobic009G123700 Sobic009G123700 Sobic002G165700--Sobic009G123700 Sobic008G116700 Sobic008G116700 Sobic002G165700--Sobic008G116700 Sobic009G008200 Sobic009G008200 Sobic002G165700--Sobic009G008200 Sobic002G165700--Sobic002G069000 Sobic007G016750 Sobic007G016750 Sobic002G165700--Sobic007G016750 Sobic002G165700--Sobic010G134000 Sobic002G165700--Sobic003G433400 Sobic002G076500 Sobic002G076500 Sobic002G165700--Sobic002G076500 Sobic002G079000 Sobic002G079000 Sobic006G250800--Sobic002G079000 Sobic001G188400 Sobic001G188400 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic006G250800--Sobic002G084800 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic006G250800--Sobic001G253300 Sobic002G306100 Sobic002G306100 Sobic006G250800--Sobic002G306100
Octagon: transcription factors


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