Gene annotation
Transcriptome id Sobic.009G124600.1
Synonym Sb09g019220
Functional annotation integral membrane transporter family protein, putative, expressed
UniProt C5YXH2
Pfam PF03092
Panther DB PTHR31585 PTHR31585:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT1G64890 : Major facilitator superfamily protein
RAP-DB (Rice) LOC_Os05g32320.1 : integral membrane transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019673 , Zm00025a033682 , Zm00025a043542
Brachypodium KQK06507 , KQK06506
Barley HORVU1Hr1G056470.4 , HORVU1Hr1G056470.2 , HORVU1Hr1G056470.1 , HORVU1Hr1G056470.3
Wheat TraesCS1B02G254500 , TraesCS1D02G243000 , TraesCS1A02G243000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G079000 expressed protein -
2 Sobic.003G405600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
3 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
4 Sobic.004G078700 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
5 Sobic.007G069101 - -
6 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
7 Sobic.001G490900 growth regulator related protein, putative, expressed -
8 Sobic.007G022600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
9 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
10 Sobic.003G310300 pentatricopeptide repeat domain containing protein, putative, expressed -
11 Sobic.002G306100 ubiquinol-cytochrome C chaperone family protein, putative, expressed K17662: CBP3, cytochrome b pre-mRNA-processing protein 3
12 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
13 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
14 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
15 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
16 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
17 Sobic.006G264000 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.007G172700 ECT5, putative, expressed -
19 Sobic.001G118000 phosphatidylinositol 4-kinase PI4K, putative, expressed K00888: phosphatidylinositol 4-kinase A
20 Sobic.004G094700 ATP synthase, putative, expressed K02147: ATPeV1B, V-type H+-transporting ATPase subunit B


Gene co-expression network
sample Sobic009G124600 Sobic009G124600 Sobic002G079000 Sobic002G079000 Sobic009G124600--Sobic002G079000 Sobic003G405600 Sobic003G405600 Sobic009G124600--Sobic003G405600 Sobic007G087000 Sobic007G087000 Sobic009G124600--Sobic007G087000 Sobic004G078700 Sobic004G078700 Sobic009G124600--Sobic004G078700 Sobic007G069101 Sobic007G069101 Sobic009G124600--Sobic007G069101 Sobic003G409900 Sobic003G409900 Sobic009G124600--Sobic003G409900 Sobic001G490900 Sobic001G490900 Sobic009G124600--Sobic001G490900 Sobic007G022600 Sobic007G022600 Sobic009G124600--Sobic007G022600 Sobic010G213500 Sobic010G213500 Sobic009G124600--Sobic010G213500 Sobic002G079000--Sobic007G087000 Sobic010G169900 Sobic010G169900 Sobic002G079000--Sobic010G169900 Sobic002G079000--Sobic010G213500 Sobic004G198600 Sobic004G198600 Sobic002G079000--Sobic004G198600 Sobic006G128100 Sobic006G128100 Sobic002G079000--Sobic006G128100 Sobic006G250800 Sobic006G250800 Sobic002G079000--Sobic006G250800 Sobic007G172700 Sobic007G172700 Sobic002G079000--Sobic007G172700 Sobic001G237600 Sobic001G237600 Sobic002G079000--Sobic001G237600 Sobic002G079000--Sobic001G490900 Sobic003G117800 Sobic003G117800 Sobic003G405600--Sobic003G117800 Sobic007G077532 Sobic007G077532 Sobic003G405600--Sobic007G077532 Sobic001G257800 Sobic001G257800 Sobic003G405600--Sobic001G257800 Sobic001G114200 Sobic001G114200 Sobic003G405600--Sobic001G114200 Sobic006G060000 Sobic006G060000 Sobic003G405600--Sobic006G060000 Sobic007G030100 Sobic007G030100 Sobic003G405600--Sobic007G030100 Sobic003G405600--Sobic010G213500 Sobic003G405600--Sobic007G172700 Sobic008G055500 Sobic008G055500 Sobic003G405600--Sobic008G055500 Sobic007G087000--Sobic002G079000 Sobic007G076400 Sobic007G076400 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic008G116700 Sobic008G116700 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G087000--Sobic007G172700 Sobic009G107300 Sobic009G107300 Sobic007G087000--Sobic009G107300 Sobic001G389200 Sobic001G389200 Sobic004G078700--Sobic001G389200 Sobic001G465400 Sobic001G465400 Sobic004G078700--Sobic001G465400 Sobic004G100200 Sobic004G100200 Sobic004G078700--Sobic004G100200 Sobic010G223400 Sobic010G223400 Sobic004G078700--Sobic010G223400 Sobic002G355800 Sobic002G355800 Sobic004G078700--Sobic002G355800 Sobic004G254800 Sobic004G254800 Sobic004G078700--Sobic004G254800 Sobic007G118500 Sobic007G118500 Sobic004G078700--Sobic007G118500 Sobic001G378200 Sobic001G378200 Sobic004G078700--Sobic001G378200 Sobic003G316200 Sobic003G316200 Sobic004G078700--Sobic003G316200 Sobic002G084800 Sobic002G084800 Sobic007G069101--Sobic002G084800 Sobic001G178100 Sobic001G178100 Sobic007G069101--Sobic001G178100 Sobic003G044300 Sobic003G044300 Sobic007G069101--Sobic003G044300 Sobic003G235100 Sobic003G235100 Sobic007G069101--Sobic003G235100 Sobic003G310300 Sobic003G310300 Sobic007G069101--Sobic003G310300 Sobic010G134600 Sobic010G134600 Sobic007G069101--Sobic010G134600 Sobic007G069101--Sobic009G124600 Sobic003G092800 Sobic003G092800 Sobic007G069101--Sobic003G092800 Sobic003G010800 Sobic003G010800 Sobic007G069101--Sobic003G010800 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic003G409900--Sobic001G389200 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic003G409900--Sobic003G021600 Sobic003G409900--Sobic010G223400 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic009G128500 Sobic009G128500 Sobic003G409900--Sobic009G128500 Sobic009G194000 Sobic009G194000 Sobic001G490900--Sobic009G194000 Sobic001G490900--Sobic006G060000 Sobic001G490900--Sobic001G114200 Sobic001G490900--Sobic010G169900 Sobic003G181700 Sobic003G181700 Sobic001G490900--Sobic003G181700 Sobic001G490900--Sobic002G079000 Sobic001G490900--Sobic009G122500 Sobic001G490900--Sobic007G172700 Sobic001G141400 Sobic001G141400 Sobic001G490900--Sobic001G141400 Sobic007G022600--Sobic003G235100 Sobic009G046900 Sobic009G046900 Sobic007G022600--Sobic009G046900 Sobic007G022600--Sobic002G084800 Sobic002G198100 Sobic002G198100 Sobic007G022600--Sobic002G198100 Sobic009G116900 Sobic009G116900 Sobic007G022600--Sobic009G116900 Sobic007G022600--Sobic007G076400 Sobic007G022600--Sobic003G092800 Sobic007G022600--Sobic006G060000 Sobic003G402800 Sobic003G402800 Sobic007G022600--Sobic003G402800 Sobic010G213500--Sobic002G079000 Sobic010G213500--Sobic002G355800 Sobic010G213500--Sobic006G128100 Sobic010G213500--Sobic002G306100 Sobic010G213500--Sobic010G169900 Sobic010G213500--Sobic001G490900 Sobic010G213500--Sobic007G172700 Sobic003G398400 Sobic003G398400 Sobic010G213500--Sobic003G398400 Sobic007G125000 Sobic007G125000 Sobic010G213500--Sobic007G125000
Octagon: transcription factors


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