Gene annotation
Transcriptome id Sobic.003G397200.1
Synonym Sb03g043400
Functional annotation -
UniProt C5XFK8
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a039394 , Zm00025a026337
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G397200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
2 Sobic.008G186400 Leucine-rich repeat transmembrane protein kinase family protein(PubMedID : 26465154)@receptor-like protein kinase HAIKU2 precursor, putative, expressed -
3 Sobic.008G183200 LOL3, putative, expressed -
4 Sobic.005G188600 - -
5 Sobic.006G102400 transporter family protein, putative, expressed -
6 Sobic.008G187900 protein kinase domain containing protein, expressed -
7 Sobic.009G034600 expressed protein -
8 Sobic.003G263001 - -
9 Sobic.007G059500 down-regulated TF in developmental senescence(PubMedID : 27586543)@tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.001G098301 - -
11 Sobic.005G222900 RGH1A, putative, expressed -
12 Sobic.010G164200 osFTL12 FT-Like12 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T
13 Sobic.004G251300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
14 Sobic.006G188000 expressed protein -
15 Sobic.001G102300 homeobox domain containing protein, expressed -
16 Sobic.003G386600 calreticulin precursor protein, putative, expressed K08057: calreticulin
17 Sobic.001G423400 RNA polymerase sigma factor, putative, expressed -
18 Sobic.010G245200 expressed protein -
19 Sobic.003G185100 peptide transporter PTR2, putative, expressed -
20 Sobic.002G000600 glycosyl transferase, group 1 domain containing protein, expressed K06119: sulfoquinovosyltransferase


Gene co-expression network
sample Sobic003G397200 Sobic003G397200 Sobic010G241300 Sobic010G241300 Sobic003G397200--Sobic010G241300 Sobic008G186400 Sobic008G186400 Sobic003G397200--Sobic008G186400 Sobic008G183200 Sobic008G183200 Sobic003G397200--Sobic008G183200 Sobic005G188600 Sobic005G188600 Sobic003G397200--Sobic005G188600 Sobic006G102400 Sobic006G102400 Sobic003G397200--Sobic006G102400 Sobic008G187900 Sobic008G187900 Sobic003G397200--Sobic008G187900 Sobic009G034600 Sobic009G034600 Sobic003G397200--Sobic009G034600 Sobic003G263001 Sobic003G263001 Sobic003G397200--Sobic003G263001 Sobic007G059500 Sobic007G059500 Sobic003G397200--Sobic007G059500 Sobic010G241300--Sobic008G183200 Sobic010G241300--Sobic007G059500 Sobic005G127000 Sobic005G127000 Sobic010G241300--Sobic005G127000 Sobic004G122200 Sobic004G122200 Sobic010G241300--Sobic004G122200 Sobic010G241300--Sobic003G397200 Sobic006G010800 Sobic006G010800 Sobic010G241300--Sobic006G010800 Sobic010G241300--Sobic009G034600 Sobic005G111500 Sobic005G111500 Sobic010G241300--Sobic005G111500 Sobic007G213300 Sobic007G213300 Sobic010G241300--Sobic007G213300 Sobic008G186400--Sobic010G241300 Sobic008G186400--Sobic003G397200 Sobic010G267700 Sobic010G267700 Sobic008G186400--Sobic010G267700 Sobic008G186400--Sobic005G111500 Sobic001G006400 Sobic001G006400 Sobic008G186400--Sobic001G006400 Sobic002G102200 Sobic002G102200 Sobic008G186400--Sobic002G102200 Sobic001G168800 Sobic001G168800 Sobic008G186400--Sobic001G168800 Sobic008G186400--Sobic007G059500 Sobic004G227200 Sobic004G227200 Sobic008G186400--Sobic004G227200 Sobic008G183200--Sobic004G122200 Sobic008G183200--Sobic010G241300 Sobic008G183200--Sobic005G127000 Sobic008G183200--Sobic005G111500 Sobic008G183200--Sobic007G059500 Sobic003G110700 Sobic003G110700 Sobic008G183200--Sobic003G110700 Sobic001G377500 Sobic001G377500 Sobic008G183200--Sobic001G377500 Sobic010G164200 Sobic010G164200 Sobic008G183200--Sobic010G164200 Sobic008G183200--Sobic006G102400 Sobic001G065600 Sobic001G065600 Sobic005G188600--Sobic001G065600 Sobic001G158900 Sobic001G158900 Sobic005G188600--Sobic001G158900 Sobic006G188000 Sobic006G188000 Sobic005G188600--Sobic006G188000 Sobic003G443500 Sobic003G443500 Sobic005G188600--Sobic003G443500 Sobic006G114900 Sobic006G114900 Sobic005G188600--Sobic006G114900 Sobic006G101500 Sobic006G101500 Sobic005G188600--Sobic006G101500 Sobic008G115900 Sobic008G115900 Sobic005G188600--Sobic008G115900 Sobic001G098301 Sobic001G098301 Sobic005G188600--Sobic001G098301 Sobic006G160400 Sobic006G160400 Sobic005G188600--Sobic006G160400 Sobic006G102400--Sobic010G164200 Sobic006G102400--Sobic008G183200 Sobic006G102400--Sobic004G122200 Sobic006G102400--Sobic010G241300 Sobic001G217700 Sobic001G217700 Sobic006G102400--Sobic001G217700 Sobic006G051300 Sobic006G051300 Sobic006G102400--Sobic006G051300 Sobic006G249050 Sobic006G249050 Sobic006G102400--Sobic006G249050 Sobic003G052300 Sobic003G052300 Sobic006G102400--Sobic003G052300 Sobic006G102400--Sobic003G397200 Sobic008G187900--Sobic003G397200 Sobic008G187900--Sobic005G127000 Sobic008G187900--Sobic010G241300 Sobic001G420300 Sobic001G420300 Sobic008G187900--Sobic001G420300 Sobic004G239100 Sobic004G239100 Sobic008G187900--Sobic004G239100 Sobic008G187900--Sobic004G122200 Sobic001G005200 Sobic001G005200 Sobic008G187900--Sobic001G005200 Sobic003G412900 Sobic003G412900 Sobic008G187900--Sobic003G412900 Sobic008G066100 Sobic008G066100 Sobic008G187900--Sobic008G066100 Sobic008G063200 Sobic008G063200 Sobic009G034600--Sobic008G063200 Sobic003G421400 Sobic003G421400 Sobic009G034600--Sobic003G421400 Sobic010G269400 Sobic010G269400 Sobic009G034600--Sobic010G269400 Sobic001G102300 Sobic001G102300 Sobic009G034600--Sobic001G102300 Sobic003G292600 Sobic003G292600 Sobic009G034600--Sobic003G292600 Sobic006G258700 Sobic006G258700 Sobic009G034600--Sobic006G258700 Sobic009G034600--Sobic006G188000 Sobic010G207500 Sobic010G207500 Sobic009G034600--Sobic010G207500 Sobic009G034600--Sobic010G241300 Sobic005G012200 Sobic005G012200 Sobic003G263001--Sobic005G012200 Sobic003G403500 Sobic003G403500 Sobic003G263001--Sobic003G403500 Sobic003G263001--Sobic003G397200 Sobic001G500800 Sobic001G500800 Sobic003G263001--Sobic001G500800 Sobic002G200700 Sobic002G200700 Sobic003G263001--Sobic002G200700 Sobic003G224100 Sobic003G224100 Sobic003G263001--Sobic003G224100 Sobic005G110502 Sobic005G110502 Sobic003G263001--Sobic005G110502 Sobic003G263001--Sobic005G188600 Sobic007G141700 Sobic007G141700 Sobic003G263001--Sobic007G141700 Sobic007G059500--Sobic005G127000 Sobic007G059500--Sobic010G241300 Sobic007G059500--Sobic008G183200 Sobic001G498300 Sobic001G498300 Sobic007G059500--Sobic001G498300 Sobic007G059500--Sobic001G377500 Sobic010G218600 Sobic010G218600 Sobic007G059500--Sobic010G218600 Sobic008G063100 Sobic008G063100 Sobic007G059500--Sobic008G063100 Sobic002G281000 Sobic002G281000 Sobic007G059500--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic007G059500--Sobic005G021600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.