Gene annotation
Transcriptome id Sobic.007G059500.1
Synonym SbNF-YB10, Sb07g004740,Nuclear Factor Y, NF-YB3
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
tentative name (PubMedID : 31536532)
histone-like transcription factor and archaeal histone, putative, expressed
UniProt C5YHV2
Pfam PF00808
Panther DB PTHR11064 PTHR11064:SF48
NCBI CDD KOG0869; CCAAT-binding factor, subunit A (HAP3)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14540 : nuclear factor Y, subunit B3
RAP-DB (Rice) LOC_Os08g07740.1 : histone-like transcription factor and archaeal histone, putative, expressed
MaizeGDB (Corn) Zm00025a050499 , Zm00025a048711 , Zm00025a030028 , Zm00025a039184 , Zm00025a026114 , Zm00025a015157 , Zm00025a002857
Brachypodium KQK04759 , PNT73541 , KQK15318 , KQK21295 , KQJ95195 , PNT71091 , KQK05856
Barley HORVU1Hr1G090450.11 , HORVU1Hr1G090450.10 , HORVU1Hr1G090450.12 , HORVU1Hr1G071620.7 , HORVU1Hr1G071620.6 , HORVU1Hr1G071620.5 , HORVU1Hr1G071620.4 , HORVU1Hr1G071620.3 , HORVU1Hr1G071620.2 , HORVU1Hr1G071620.1 , HORVU1Hr1G071620.8 , HORVU1Hr1G071620.22 , HORVU1Hr1G071620.23 , HORVU1Hr1G071620.20 , HORVU1Hr1G071620.21 , HORVU7Hr1G105500.5 , HORVU7Hr1G105500.8 , HORVU7Hr1G105500.7 , HORVU2Hr1G032320.4 , HORVU7Hr1G105500.1 , HORVU7Hr1G105500.3 , HORVU7Hr1G105500.4 , HORVU3Hr1G098500.1 , HORVU3Hr1G098500.2 , HORVU7Hr1G105500.6 , HORVU5Hr1G004870.2 , HORVU5Hr1G004870.3 , HORVU7Hr1G105460.1 , HORVU5Hr1G004870.1 , HORVU5Hr1G004870.6 , HORVU5Hr1G004870.7 , HORVU5Hr1G004870.4 , HORVU5Hr1G004870.5 , HORVU1Hr1G071620.9 , HORVU2Hr1G032320.1 , HORVU2Hr1G032320.2 , HORVU2Hr1G032320.3 , HORVU3Hr1G047250.1 , HORVU3Hr1G047250.2 , HORVU7Hr1G105500.9 , HORVU7Hr1G105500.2 , HORVU1Hr1G071620.19 , HORVU1Hr1G071620.18 , HORVU1Hr1G071620.16 , HORVU1Hr1G071620.14 , HORVU1Hr1G071620.13 , HORVU1Hr1G071620.12 , HORVU1Hr1G071620.11 , HORVU2Hr1G087460.1 , HORVU7Hr1G043520.3 , HORVU7Hr1G043520.2 , HORVU1Hr1G090450.9 , HORVU1Hr1G090450.8 , HORVU7Hr1G043520.1 , HORVU1Hr1G090450.1 , HORVU1Hr1G090450.3 , HORVU1Hr1G090450.2 , HORVU1Hr1G090450.5 , HORVU1Hr1G090450.4 , HORVU1Hr1G090450.7 , HORVU1Hr1G090450.6
Wheat TraesCS1D02G287500 , TraesCS1D02G287500 , TraesCS1B02G297900 , TraesCS1B02G297900 , TraesCS1D02G419500 , TraesCS7A02G214600 , TraesCS7A02G214900 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G288500 , TraesCS1A02G411700 , TraesCS1B02G442000 , TraesCS1D02G419500 , TraesCS1B02G297900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G127000 Upregulated in cold susceptible sorghum under stress(PubMedID : 26645959)@cytochrome P450, putative, expressed -
2 Sobic.010G241300 -(PubMedID : 26465154)@OsCML29 - Calmodulin-related calcium sensor protein, expressed -
3 Sobic.008G183200 LOL3, putative, expressed -
4 Sobic.001G498300 galactose mutarotase-like, putative, expressed -
5 Sobic.001G377500 POEI47 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
6 Sobic.010G218600 inactive receptor kinase At2g26730 precursor, putative, expressed -
7 Sobic.008G063100 thioredoxin, putative, expressed K03671: thioredoxin 1
8 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
9 Sobic.005G021600 expressed protein -
10 Sobic.005G111500 FHA domain containing protein, putative, expressed -
11 Sobic.009G202400 expressed protein -
12 Sobic.004G343100 YCF37, putative, expressed -
13 Sobic.008G063200 expressed protein -
14 Sobic.001G186200 pentatricopeptide, putative, expressed -
15 Sobic.001G525900 homeobox domain containing protein, expressed -
16 Sobic.009G034600 expressed protein -
17 Sobic.002G069050 - -
18 Sobic.004G152100 expressed protein -
19 Sobic.003G291400 dehydrogenase, putative, expressed -
20 Sobic.004G096100 expressed protein -


Gene co-expression network
sample Sobic007G059500 Sobic007G059500 Sobic005G127000 Sobic005G127000 Sobic007G059500--Sobic005G127000 Sobic010G241300 Sobic010G241300 Sobic007G059500--Sobic010G241300 Sobic008G183200 Sobic008G183200 Sobic007G059500--Sobic008G183200 Sobic001G498300 Sobic001G498300 Sobic007G059500--Sobic001G498300 Sobic001G377500 Sobic001G377500 Sobic007G059500--Sobic001G377500 Sobic010G218600 Sobic010G218600 Sobic007G059500--Sobic010G218600 Sobic008G063100 Sobic008G063100 Sobic007G059500--Sobic008G063100 Sobic002G281000 Sobic002G281000 Sobic007G059500--Sobic002G281000 Sobic005G021600 Sobic005G021600 Sobic007G059500--Sobic005G021600 Sobic005G127000--Sobic007G059500 Sobic005G127000--Sobic008G183200 Sobic005G127000--Sobic010G241300 Sobic004G122200 Sobic004G122200 Sobic005G127000--Sobic004G122200 Sobic005G127000--Sobic001G377500 Sobic001G186200 Sobic001G186200 Sobic005G127000--Sobic001G186200 Sobic010G225600 Sobic010G225600 Sobic005G127000--Sobic010G225600 Sobic005G127000--Sobic001G498300 Sobic008G151000 Sobic008G151000 Sobic005G127000--Sobic008G151000 Sobic010G241300--Sobic008G183200 Sobic010G241300--Sobic007G059500 Sobic010G241300--Sobic005G127000 Sobic010G241300--Sobic004G122200 Sobic003G397200 Sobic003G397200 Sobic010G241300--Sobic003G397200 Sobic006G010800 Sobic006G010800 Sobic010G241300--Sobic006G010800 Sobic009G034600 Sobic009G034600 Sobic010G241300--Sobic009G034600 Sobic005G111500 Sobic005G111500 Sobic010G241300--Sobic005G111500 Sobic007G213300 Sobic007G213300 Sobic010G241300--Sobic007G213300 Sobic008G183200--Sobic004G122200 Sobic008G183200--Sobic010G241300 Sobic008G183200--Sobic005G127000 Sobic008G183200--Sobic005G111500 Sobic008G183200--Sobic007G059500 Sobic003G110700 Sobic003G110700 Sobic008G183200--Sobic003G110700 Sobic008G183200--Sobic001G377500 Sobic010G164200 Sobic010G164200 Sobic008G183200--Sobic010G164200 Sobic006G102400 Sobic006G102400 Sobic008G183200--Sobic006G102400 Sobic001G498300--Sobic010G218600 Sobic003G187000 Sobic003G187000 Sobic001G498300--Sobic003G187000 Sobic007G178500 Sobic007G178500 Sobic001G498300--Sobic007G178500 Sobic001G407900 Sobic001G407900 Sobic001G498300--Sobic001G407900 Sobic008G063500 Sobic008G063500 Sobic001G498300--Sobic008G063500 Sobic004G343100 Sobic004G343100 Sobic001G498300--Sobic004G343100 Sobic001G498300--Sobic005G021600 Sobic005G192600 Sobic005G192600 Sobic001G498300--Sobic005G192600 Sobic004G314800 Sobic004G314800 Sobic001G498300--Sobic004G314800 Sobic001G377500--Sobic005G127000 Sobic002G001800 Sobic002G001800 Sobic001G377500--Sobic002G001800 Sobic001G377500--Sobic008G183200 Sobic003G068800 Sobic003G068800 Sobic001G377500--Sobic003G068800 Sobic001G377500--Sobic007G059500 Sobic001G377500--Sobic004G122200 Sobic001G377500--Sobic010G241300 Sobic001G377500--Sobic010G218600 Sobic001G377500--Sobic010G225600 Sobic010G218600--Sobic001G498300 Sobic010G218600--Sobic005G021600 Sobic010G265500 Sobic010G265500 Sobic010G218600--Sobic010G265500 Sobic010G218600--Sobic007G178500 Sobic010G218600--Sobic008G063500 Sobic010G218600--Sobic001G407900 Sobic001G447700 Sobic001G447700 Sobic010G218600--Sobic001G447700 Sobic007G023300 Sobic007G023300 Sobic010G218600--Sobic007G023300 Sobic010G218600--Sobic005G192600 Sobic008G063100--Sobic004G343100 Sobic008G063100--Sobic005G021600 Sobic008G063100--Sobic002G281000 Sobic001G404500 Sobic001G404500 Sobic008G063100--Sobic001G404500 Sobic001G198700 Sobic001G198700 Sobic008G063100--Sobic001G198700 Sobic004G063200 Sobic004G063200 Sobic008G063100--Sobic004G063200 Sobic002G195700 Sobic002G195700 Sobic008G063100--Sobic002G195700 Sobic009G202400 Sobic009G202400 Sobic008G063100--Sobic009G202400 Sobic005G175600 Sobic005G175600 Sobic008G063100--Sobic005G175600 Sobic001G525900 Sobic001G525900 Sobic002G281000--Sobic001G525900 Sobic001G019300 Sobic001G019300 Sobic002G281000--Sobic001G019300 Sobic002G281000--Sobic008G063100 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic005G097800 Sobic005G097800 Sobic002G281000--Sobic005G097800 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic002G281000--Sobic005G021600 Sobic005G021600--Sobic008G063100 Sobic005G021600--Sobic010G265500 Sobic009G028400 Sobic009G028400 Sobic005G021600--Sobic009G028400 Sobic005G021600--Sobic002G195700 Sobic005G021600--Sobic007G178500 Sobic005G021600--Sobic010G218600 Sobic005G021600--Sobic002G281000 Sobic007G132500 Sobic007G132500 Sobic005G021600--Sobic007G132500 Sobic001G006000 Sobic001G006000 Sobic005G021600--Sobic001G006000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.