Gene annotation
Transcriptome id Sobic.004G122500.1
Synonym Sb04g010210, ROPGEF11, ATROPGEF11, PIRF1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
dynein light chain type 1 domain containing protein, expressed
UniProt C5XZZ1
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF48
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT1G52240 : RHO guanyl-nucleotide exchange factor 11
RAP-DB (Rice) LOC_Os02g16909.2 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019842
Brachypodium KQJ94344
Barley HORVU7Hr1G011400.3 , HORVU7Hr1G011400.2 , HORVU7Hr1G011400.1
Wheat TraesCS7D02G056400 , TraesCS4A02G427300 , TraesCS7A02G061500
Populus -


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cDNA sequences
Sobic.004G122500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G036700 expressed protein -
2 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
3 Sobic.004G020401 - -
4 Sobic.004G291800 - -
5 Sobic.006G180432 - -
6 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
7 Sobic.008G105900 - -
8 Sobic.001G497200 expressed protein -
9 Sobic.006G204200 putrescine-binding periplasmic protein-related, putative, expressed -
10 Sobic.003G357600 laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.009G109450 - -
12 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -
13 Sobic.001G363100 universal stress protein domain containing protein, putative, expressed -
14 Sobic.002G376800 EF hand family protein, putative -
15 Sobic.003G057800 rho termination factor, N-terminal domain containing protein, expressed -
16 Sobic.003G357500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@laccase precursor protein, putative, expressed K05909: laccase
17 Sobic.001G433200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@beta-galactosidase precursor, putative, expressed -
18 Sobic.009G045700 E3 ubiquitin-protein ligase SINA-like, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
19 Sobic.007G158100 expressed protein -
20 Sobic.009G078500 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic004G122500 Sobic004G122500 Sobic005G036700 Sobic005G036700 Sobic004G122500--Sobic005G036700 Sobic009G198900 Sobic009G198900 Sobic004G122500--Sobic009G198900 Sobic004G020401 Sobic004G020401 Sobic004G122500--Sobic004G020401 Sobic004G291800 Sobic004G291800 Sobic004G122500--Sobic004G291800 Sobic006G180432 Sobic006G180432 Sobic004G122500--Sobic006G180432 Sobic009G180200 Sobic009G180200 Sobic004G122500--Sobic009G180200 Sobic008G105900 Sobic008G105900 Sobic004G122500--Sobic008G105900 Sobic001G497200 Sobic001G497200 Sobic004G122500--Sobic001G497200 Sobic006G204200 Sobic006G204200 Sobic004G122500--Sobic006G204200 Sobic007G130100 Sobic007G130100 Sobic005G036700--Sobic007G130100 Sobic005G036700--Sobic009G198900 Sobic004G211400 Sobic004G211400 Sobic005G036700--Sobic004G211400 Sobic004G113800 Sobic004G113800 Sobic005G036700--Sobic004G113800 Sobic003G324000 Sobic003G324000 Sobic005G036700--Sobic003G324000 Sobic005G036700--Sobic004G291800 Sobic005G036700--Sobic004G122500 Sobic001G377000 Sobic001G377000 Sobic005G036700--Sobic001G377000 Sobic005G036700--Sobic004G020401 Sobic009G198900--Sobic003G324000 Sobic009G087800 Sobic009G087800 Sobic009G198900--Sobic009G087800 Sobic010G280100 Sobic010G280100 Sobic009G198900--Sobic010G280100 Sobic003G258400 Sobic003G258400 Sobic009G198900--Sobic003G258400 Sobic005G187200 Sobic005G187200 Sobic009G198900--Sobic005G187200 Sobic007G054000 Sobic007G054000 Sobic009G198900--Sobic007G054000 Sobic009G110366 Sobic009G110366 Sobic009G198900--Sobic009G110366 Sobic007G205800 Sobic007G205800 Sobic009G198900--Sobic007G205800 Sobic006G196000 Sobic006G196000 Sobic009G198900--Sobic006G196000 Sobic004G020401--Sobic004G291800 Sobic004G020401--Sobic009G110366 Sobic009G109450 Sobic009G109450 Sobic004G020401--Sobic009G109450 Sobic009G197200 Sobic009G197200 Sobic004G020401--Sobic009G197200 Sobic003G057800 Sobic003G057800 Sobic004G020401--Sobic003G057800 Sobic004G020401--Sobic007G130100 Sobic001G479500 Sobic001G479500 Sobic004G020401--Sobic001G479500 Sobic003G357500 Sobic003G357500 Sobic004G020401--Sobic003G357500 Sobic008G161401 Sobic008G161401 Sobic004G020401--Sobic008G161401 Sobic004G291800--Sobic004G020401 Sobic004G291800--Sobic009G197200 Sobic004G291800--Sobic009G110366 Sobic002G212800 Sobic002G212800 Sobic004G291800--Sobic002G212800 Sobic007G112900 Sobic007G112900 Sobic004G291800--Sobic007G112900 Sobic004G291800--Sobic009G109450 Sobic004G291800--Sobic007G130100 Sobic006G273100 Sobic006G273100 Sobic004G291800--Sobic006G273100 Sobic004G291800--Sobic003G057800 Sobic006G180432--Sobic003G057800 Sobic001G269300 Sobic001G269300 Sobic006G180432--Sobic001G269300 Sobic007G052900 Sobic007G052900 Sobic006G180432--Sobic007G052900 Sobic006G180432--Sobic001G479500 Sobic006G180432--Sobic001G497200 Sobic001G046600 Sobic001G046600 Sobic006G180432--Sobic001G046600 Sobic006G180432--Sobic005G187200 Sobic004G016500 Sobic004G016500 Sobic006G180432--Sobic004G016500 Sobic006G048775 Sobic006G048775 Sobic006G180432--Sobic006G048775 Sobic004G199600 Sobic004G199600 Sobic009G180200--Sobic004G199600 Sobic001G363100 Sobic001G363100 Sobic009G180200--Sobic001G363100 Sobic009G180200--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G180200--Sobic009G078500 Sobic007G023700 Sobic007G023700 Sobic009G180200--Sobic007G023700 Sobic009G231300 Sobic009G231300 Sobic009G180200--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic009G180200--Sobic005G130100 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800 Sobic005G063700 Sobic005G063700 Sobic008G105900--Sobic005G063700 Sobic008G105900--Sobic007G130100 Sobic008G105900--Sobic001G269300 Sobic008G105900--Sobic006G180432 Sobic002G420300 Sobic002G420300 Sobic008G105900--Sobic002G420300 Sobic008G105900--Sobic001G497200 Sobic008G105900--Sobic006G048775 Sobic008G105900--Sobic007G052900 Sobic004G315800 Sobic004G315800 Sobic008G105900--Sobic004G315800 Sobic005G001800 Sobic005G001800 Sobic001G497200--Sobic005G001800 Sobic010G202000 Sobic010G202000 Sobic001G497200--Sobic010G202000 Sobic001G497200--Sobic006G180432 Sobic001G497200--Sobic007G054000 Sobic001G497200--Sobic007G052900 Sobic006G046000 Sobic006G046000 Sobic001G497200--Sobic006G046000 Sobic001G162300 Sobic001G162300 Sobic001G497200--Sobic001G162300 Sobic010G056200 Sobic010G056200 Sobic001G497200--Sobic010G056200 Sobic001G497200--Sobic006G048775 Sobic002G376800 Sobic002G376800 Sobic006G204200--Sobic002G376800 Sobic006G204200--Sobic003G057800 Sobic006G204200--Sobic001G479500 Sobic006G204200--Sobic004G016500 Sobic006G204200--Sobic004G315800 Sobic002G330400 Sobic002G330400 Sobic006G204200--Sobic002G330400 Sobic006G204200--Sobic008G161401 Sobic006G204200--Sobic004G020401 Sobic010G248200 Sobic010G248200 Sobic006G204200--Sobic010G248200
Octagon: transcription factors


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