Gene annotation
Transcriptome id Sobic.007G203100.1
Synonym Sb07g027040
Functional annotation pentatricopeptide repeat protein, putative, expressed
UniProt A0A1B6PIU7
Pfam -
Panther DB PTHR24015 PTHR24015:SF895
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G42630 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os08g40870.1 : pentatricopeptide repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a005159
Brachypodium KQJ99000
Barley HORVU7Hr1G052070.7 , HORVU7Hr1G052070.6 , HORVU7Hr1G052070.5 , HORVU7Hr1G052070.4 , HORVU7Hr1G052070.3 , HORVU7Hr1G052070.2 , HORVU7Hr1G052070.1
Wheat -
Populus -


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cDNA sequences
Sobic.007G203100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G244600 nifU, putative, expressed -
2 Sobic.001G178200 - -
3 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
4 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
5 Sobic.001G378550 - -
6 Sobic.001G077100 pentatricopeptide, putative, expressed -
7 Sobic.009G070900 - -
8 Sobic.004G263300 PPR repeat domain containing protein, putative, expressed -
9 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
10 Sobic.007G033200 fringe-related protein, putative, expressed -
11 Sobic.002G302100 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
12 Sobic.003G336200 expressed protein -
13 Sobic.010G058650 - -
14 Sobic.010G004001 - -
15 Sobic.009G249301 - -
16 Sobic.004G072950 - -
17 Sobic.002G052500 - -
18 Sobic.010G173550 - -
19 Sobic.006G214101 - -
20 Sobic.004G124800 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase


Gene co-expression network
sample Sobic007G203100 Sobic007G203100 Sobic010G244600 Sobic010G244600 Sobic007G203100--Sobic010G244600 Sobic001G178200 Sobic001G178200 Sobic007G203100--Sobic001G178200 Sobic008G168000 Sobic008G168000 Sobic007G203100--Sobic008G168000 Sobic001G134600 Sobic001G134600 Sobic007G203100--Sobic001G134600 Sobic001G378550 Sobic001G378550 Sobic007G203100--Sobic001G378550 Sobic001G077100 Sobic001G077100 Sobic007G203100--Sobic001G077100 Sobic009G070900 Sobic009G070900 Sobic007G203100--Sobic009G070900 Sobic004G263300 Sobic004G263300 Sobic007G203100--Sobic004G263300 Sobic001G419900 Sobic001G419900 Sobic007G203100--Sobic001G419900 Sobic007G204400 Sobic007G204400 Sobic010G244600--Sobic007G204400 Sobic004G072000 Sobic004G072000 Sobic010G244600--Sobic004G072000 Sobic005G208500 Sobic005G208500 Sobic010G244600--Sobic005G208500 Sobic003G336200 Sobic003G336200 Sobic010G244600--Sobic003G336200 Sobic005G005500 Sobic005G005500 Sobic010G244600--Sobic005G005500 Sobic006G204000 Sobic006G204000 Sobic010G244600--Sobic006G204000 Sobic003G309600 Sobic003G309600 Sobic010G244600--Sobic003G309600 Sobic007G013500 Sobic007G013500 Sobic010G244600--Sobic007G013500 Sobic001G543500 Sobic001G543500 Sobic010G244600--Sobic001G543500 Sobic006G080600 Sobic006G080600 Sobic001G178200--Sobic006G080600 Sobic002G052500 Sobic002G052500 Sobic001G178200--Sobic002G052500 Sobic001G178200--Sobic005G208500 Sobic006G272450 Sobic006G272450 Sobic001G178200--Sobic006G272450 Sobic001G178200--Sobic001G378550 Sobic001G178200--Sobic010G244600 Sobic001G184900 Sobic001G184900 Sobic001G178200--Sobic001G184900 Sobic001G339900 Sobic001G339900 Sobic001G178200--Sobic001G339900 Sobic009G125500 Sobic009G125500 Sobic001G178200--Sobic009G125500 Sobic008G168000--Sobic001G134600 Sobic008G168000--Sobic001G339900 Sobic008G168000--Sobic009G070900 Sobic008G168000--Sobic001G378550 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic008G168000--Sobic001G178200 Sobic007G043200 Sobic007G043200 Sobic008G168000--Sobic007G043200 Sobic008G168000--Sobic006G272450 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G134600--Sobic001G419900 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic006G185400 Sobic006G185400 Sobic001G378550--Sobic006G185400 Sobic004G330500 Sobic004G330500 Sobic001G378550--Sobic004G330500 Sobic001G378550--Sobic003G343100 Sobic007G152200 Sobic007G152200 Sobic001G378550--Sobic007G152200 Sobic005G189400 Sobic005G189400 Sobic001G378550--Sobic005G189400 Sobic005G037500 Sobic005G037500 Sobic001G378550--Sobic005G037500 Sobic002G205201 Sobic002G205201 Sobic001G378550--Sobic002G205201 Sobic001G361500 Sobic001G361500 Sobic001G378550--Sobic001G361500 Sobic006G209100 Sobic006G209100 Sobic001G378550--Sobic006G209100 Sobic008G022600 Sobic008G022600 Sobic001G077100--Sobic008G022600 Sobic001G407900 Sobic001G407900 Sobic001G077100--Sobic001G407900 Sobic004G270400 Sobic004G270400 Sobic001G077100--Sobic004G270400 Sobic010G082800 Sobic010G082800 Sobic001G077100--Sobic010G082800 Sobic001G339100 Sobic001G339100 Sobic001G077100--Sobic001G339100 Sobic007G076900 Sobic007G076900 Sobic001G077100--Sobic007G076900 Sobic004G017200 Sobic004G017200 Sobic001G077100--Sobic004G017200 Sobic003G088800 Sobic003G088800 Sobic001G077100--Sobic003G088800 Sobic010G060000 Sobic010G060000 Sobic001G077100--Sobic010G060000 Sobic009G070900--Sobic006G272450 Sobic009G070900--Sobic001G378550 Sobic009G070900--Sobic002G052500 Sobic008G023500 Sobic008G023500 Sobic009G070900--Sobic008G023500 Sobic009G070900--Sobic006G090201 Sobic003G245700 Sobic003G245700 Sobic009G070900--Sobic003G245700 Sobic009G164200 Sobic009G164200 Sobic009G070900--Sobic009G164200 Sobic002G356700 Sobic002G356700 Sobic009G070900--Sobic002G356700 Sobic009G070900--Sobic006G185400 Sobic005G022400 Sobic005G022400 Sobic004G263300--Sobic005G022400 Sobic007G072901 Sobic007G072901 Sobic004G263300--Sobic007G072901 Sobic004G263300--Sobic004G356600 Sobic004G263300--Sobic002G356700 Sobic004G263300--Sobic002G052500 Sobic003G045800 Sobic003G045800 Sobic004G263300--Sobic003G045800 Sobic009G233600 Sobic009G233600 Sobic004G263300--Sobic009G233600 Sobic007G056400 Sobic007G056400 Sobic004G263300--Sobic007G056400 Sobic009G194600 Sobic009G194600 Sobic004G263300--Sobic009G194600 Sobic001G419900--Sobic001G134600 Sobic002G034400 Sobic002G034400 Sobic001G419900--Sobic002G034400 Sobic005G097700 Sobic005G097700 Sobic001G419900--Sobic005G097700 Sobic001G419900--Sobic002G052500 Sobic001G419900--Sobic004G356600 Sobic001G419900--Sobic001G378550 Sobic001G419900--Sobic006G090201 Sobic001G419900--Sobic009G070900 Sobic002G175550 Sobic002G175550 Sobic001G419900--Sobic002G175550
Octagon: transcription factors


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