Gene annotation
Transcriptome id Sobic.007G193800.1
Synonym Sb07g026240
Functional annotation serine/threonine-protein kinase RIO-like, putative, expressed
UniProt C5YHT1
Pfam PF01163
Panther DB PTHR10593 PTHR10593:SF23
NCBI CDD -
KEGG Orthology K07178; RIO kinase 1
Gene Ontology GO:0004674; protein serine/threonine kinase activity


Orthologs (automatic annotation)
TAIR AT5G37350 : Serine/threonine-protein kinase Rio1
RAP-DB (Rice) LOC_Os07g06820.1 : serine/threonine-protein kinase RIO-like, putative, expressed
MaizeGDB (Corn) Zm00025a014390 , Zm00025a014389 , Zm00025a014388 , Zm00025a022337
Brachypodium KQJ99116 , KQJ99117 , KQJ99118 , PNT69656
Barley HORVU2Hr1G046850.1 , HORVU2Hr1G046850.2 , HORVU7Hr1G054160.9 , HORVU7Hr1G054160.8 , HORVU7Hr1G054160.3 , HORVU6Hr1G077410.10 , HORVU6Hr1G077410.13 , HORVU6Hr1G077410.12 , HORVU7Hr1G054160.7 , HORVU6Hr1G077410.14 , HORVU7Hr1G054160.4 , HORVU6Hr1G077410.9 , HORVU6Hr1G077410.8 , HORVU6Hr1G077410.5 , HORVU6Hr1G077410.4 , HORVU6Hr1G077410.7 , HORVU6Hr1G077410.6 , HORVU6Hr1G077410.1 , HORVU6Hr1G077410.2 , HORVU7Hr1G054160.2 , HORVU7Hr1G054160.1 , HORVU7Hr1G054160.6
Wheat TraesCS7B02G158300 , TraesCS3A02G145700 , TraesCS7D02G317700 , TraesCS3B02G172700 , TraesCS7D02G317700 , TraesCS7A02G260300 , TraesCS7B02G203800 , TraesCS2A02G223900 , TraesCS7D02G261300
Populus -


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cDNA sequences
Sobic.007G193800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G387500 - K14778: DDX49, ATP-dependent RNA helicase DDX49/DBP8
2 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
3 Sobic.001G418650 - -
4 Sobic.002G364000 myosin heavy chain-related, putative, expressed -
5 Sobic.001G178200 - -
6 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
7 Sobic.002G052500 - -
8 Sobic.001G339900 - -
9 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
10 Sobic.010G004001 - -
11 Sobic.009G255800 eukaryotic translation initiation factor 5B, putative, expressed K03243: translation initiation factor 5B
12 Sobic.001G063900 RING-H2 finger protein ATL5D, putative, expressed -
13 Sobic.001G362400 PPR repeat containing protein, expressed -
14 Sobic.006G272450 - -
15 Sobic.001G184900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"Expressed protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659837)@expressed protein -
16 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
17 Sobic.002G325400 NUC153 domain containing protein, expressed -
18 Sobic.002G034400 expressed protein -
19 Sobic.006G166300 WRKY36, expressed -
20 Sobic.004G205200 PPR repeat containing protein, expressed -


Gene co-expression network
sample Sobic007G193800 Sobic007G193800 Sobic002G387500 Sobic002G387500 Sobic007G193800--Sobic002G387500 Sobic008G168000 Sobic008G168000 Sobic007G193800--Sobic008G168000 Sobic001G418650 Sobic001G418650 Sobic007G193800--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G193800--Sobic002G364000 Sobic001G178200 Sobic001G178200 Sobic007G193800--Sobic001G178200 Sobic001G134600 Sobic001G134600 Sobic007G193800--Sobic001G134600 Sobic002G052500 Sobic002G052500 Sobic007G193800--Sobic002G052500 Sobic001G339900 Sobic001G339900 Sobic007G193800--Sobic001G339900 Sobic007G043200 Sobic007G043200 Sobic007G193800--Sobic007G043200 Sobic002G387500--Sobic007G193800 Sobic002G387500--Sobic008G168000 Sobic004G205200 Sobic004G205200 Sobic002G387500--Sobic004G205200 Sobic002G034400 Sobic002G034400 Sobic002G387500--Sobic002G034400 Sobic002G387500--Sobic001G134600 Sobic010G004001 Sobic010G004001 Sobic002G387500--Sobic010G004001 Sobic002G371500 Sobic002G371500 Sobic002G387500--Sobic002G371500 Sobic006G166300 Sobic006G166300 Sobic002G387500--Sobic006G166300 Sobic002G138500 Sobic002G138500 Sobic002G387500--Sobic002G138500 Sobic008G168000--Sobic001G134600 Sobic008G168000--Sobic001G339900 Sobic009G070900 Sobic009G070900 Sobic008G168000--Sobic009G070900 Sobic001G378550 Sobic001G378550 Sobic008G168000--Sobic001G378550 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic008G168000--Sobic001G178200 Sobic008G168000--Sobic007G043200 Sobic006G272450 Sobic006G272450 Sobic008G168000--Sobic006G272450 Sobic001G418650--Sobic001G339900 Sobic001G418650--Sobic009G070900 Sobic001G418650--Sobic001G178200 Sobic001G418650--Sobic001G378550 Sobic001G418650--Sobic006G272450 Sobic001G418650--Sobic001G134600 Sobic001G418650--Sobic002G052500 Sobic009G194600 Sobic009G194600 Sobic001G418650--Sobic009G194600 Sobic003G245700 Sobic003G245700 Sobic001G418650--Sobic003G245700 Sobic009G255800 Sobic009G255800 Sobic002G364000--Sobic009G255800 Sobic002G364000--Sobic007G043200 Sobic004G078300 Sobic004G078300 Sobic002G364000--Sobic004G078300 Sobic010G080600 Sobic010G080600 Sobic002G364000--Sobic010G080600 Sobic002G364000--Sobic007G193800 Sobic006G169800 Sobic006G169800 Sobic002G364000--Sobic006G169800 Sobic010G131000 Sobic010G131000 Sobic002G364000--Sobic010G131000 Sobic002G388500 Sobic002G388500 Sobic002G364000--Sobic002G388500 Sobic007G071400 Sobic007G071400 Sobic002G364000--Sobic007G071400 Sobic006G080600 Sobic006G080600 Sobic001G178200--Sobic006G080600 Sobic001G178200--Sobic002G052500 Sobic005G208500 Sobic005G208500 Sobic001G178200--Sobic005G208500 Sobic001G178200--Sobic006G272450 Sobic001G178200--Sobic001G378550 Sobic010G244600 Sobic010G244600 Sobic001G178200--Sobic010G244600 Sobic001G184900 Sobic001G184900 Sobic001G178200--Sobic001G184900 Sobic001G178200--Sobic001G339900 Sobic009G125500 Sobic009G125500 Sobic001G178200--Sobic009G125500 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G419900 Sobic001G419900 Sobic001G134600--Sobic001G419900 Sobic001G134600--Sobic001G049000 Sobic004G356600 Sobic004G356600 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic006G090201 Sobic006G090201 Sobic001G134600--Sobic006G090201 Sobic003G343100 Sobic003G343100 Sobic001G134600--Sobic003G343100 Sobic001G063900 Sobic001G063900 Sobic001G134600--Sobic001G063900 Sobic007G072901 Sobic007G072901 Sobic002G052500--Sobic007G072901 Sobic002G052500--Sobic003G245700 Sobic002G052500--Sobic003G343100 Sobic008G023500 Sobic008G023500 Sobic002G052500--Sobic008G023500 Sobic002G052500--Sobic006G090201 Sobic006G185400 Sobic006G185400 Sobic002G052500--Sobic006G185400 Sobic009G010800 Sobic009G010800 Sobic002G052500--Sobic009G010800 Sobic003G178200 Sobic003G178200 Sobic002G052500--Sobic003G178200 Sobic004G330500 Sobic004G330500 Sobic002G052500--Sobic004G330500 Sobic001G339900--Sobic001G378550 Sobic001G339900--Sobic006G272450 Sobic001G339900--Sobic002G052500 Sobic009G116766 Sobic009G116766 Sobic001G339900--Sobic009G116766 Sobic001G339900--Sobic003G245700 Sobic008G078600 Sobic008G078600 Sobic001G339900--Sobic008G078600 Sobic001G339900--Sobic009G010800 Sobic001G339900--Sobic006G185400 Sobic001G361500 Sobic001G361500 Sobic001G339900--Sobic001G361500 Sobic007G138300 Sobic007G138300 Sobic007G043200--Sobic007G138300 Sobic007G043200--Sobic001G134600 Sobic007G043200--Sobic008G168000 Sobic007G033200 Sobic007G033200 Sobic007G043200--Sobic007G033200 Sobic001G362400 Sobic001G362400 Sobic007G043200--Sobic001G362400 Sobic007G043200--Sobic001G419900 Sobic003G264000 Sobic003G264000 Sobic007G043200--Sobic003G264000 Sobic007G043200--Sobic001G418650 Sobic007G043200--Sobic002G364000
Octagon: transcription factors


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