Gene annotation
Transcriptome id Sobic.009G255800.1
Synonym Sb09g030590
Functional annotation eukaryotic translation initiation factor 5B, putative, expressed
UniProt A0A1B6PAE0
Pfam PF03144 PF11987 PF00009
Panther DB PTHR23115 PTHR23115:SF186
NCBI CDD -
KEGG Orthology K03243; translation initiation factor 5B
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G76810 : eukaryotic translation initiation factor 2 (eIF-2) family protein
RAP-DB (Rice) LOC_Os05g51500.1 : eukaryotic translation initiation factor 5B, putative, expressed
MaizeGDB (Corn) Zm00025a036785
Brachypodium KQJ92418 , KQK08451
Barley HORVU1Hr1G018840.1 , HORVU1Hr1G094740.1 , HORVU1Hr1G094740.2 , HORVU1Hr1G094740.5 , HORVU1Hr1G094740.6 , HORVU1Hr1G094740.3 , HORVU1Hr1G094740.4
Wheat TraesCS1D02G446900 , TraesCS1D02G446900 , TraesCS1B02G472500 , TraesCS1A02G438600 , TraesCS1A02G438600 , TraesCS1D02G446400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
2 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
3 Sobic.002G147600 ubiquitin-protein ligase 1, putative, expressed K10592: HUWE1, MULE, E3 ubiquitin-protein ligase HUWE1
4 Sobic.001G542500 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
5 Sobic.002G335600 eukaryotic translation initiation factor 4G, putative, expressed K03260: translation initiation factor 4G
6 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
7 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
8 Sobic.001G493700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed -
9 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
10 Sobic.008G085300 hhH-GPD superfamily base excision DNA repair protein, expressed -
11 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
12 Sobic.002G388500 SART-1 family protein, putative, expressed K11984: SART1, HAF, U4/U6.U5 tri-snRNP-associated protein 1
13 Sobic.001G277900 expressed protein -
14 Sobic.007G103100 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
15 Sobic.006G184900 tetratricopeptide repeat domain containing protein, expressed K15176: RNA polymerase-associated protein CTR9
16 Sobic.005G187300 lipin, N-terminal conserved region family protein, expressed K15728: phosphatidate phosphatase LPIN
17 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
18 Sobic.003G196300 DNA binding protein, putative, expressed -
19 Sobic.001G110600 HEAT repeat family protein, putative, expressed -
20 Sobic.001G178300 DNA-binding protein, putative, expressed -


Gene co-expression network
sample Sobic009G255800 Sobic009G255800 Sobic010G169600 Sobic010G169600 Sobic009G255800--Sobic010G169600 Sobic007G054800 Sobic007G054800 Sobic009G255800--Sobic007G054800 Sobic002G147600 Sobic002G147600 Sobic009G255800--Sobic002G147600 Sobic001G542500 Sobic001G542500 Sobic009G255800--Sobic001G542500 Sobic002G335600 Sobic002G335600 Sobic009G255800--Sobic002G335600 Sobic006G280000 Sobic006G280000 Sobic009G255800--Sobic006G280000 Sobic008G098900 Sobic008G098900 Sobic009G255800--Sobic008G098900 Sobic001G493700 Sobic001G493700 Sobic009G255800--Sobic001G493700 Sobic003G221400 Sobic003G221400 Sobic009G255800--Sobic003G221400 Sobic003G186000 Sobic003G186000 Sobic010G169600--Sobic003G186000 Sobic004G276400 Sobic004G276400 Sobic010G169600--Sobic004G276400 Sobic010G169600--Sobic008G098900 Sobic001G370900 Sobic001G370900 Sobic010G169600--Sobic001G370900 Sobic002G308700 Sobic002G308700 Sobic010G169600--Sobic002G308700 Sobic008G085300 Sobic008G085300 Sobic010G169600--Sobic008G085300 Sobic006G184900 Sobic006G184900 Sobic010G169600--Sobic006G184900 Sobic004G223000 Sobic004G223000 Sobic010G169600--Sobic004G223000 Sobic005G162500 Sobic005G162500 Sobic010G169600--Sobic005G162500 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic007G054800--Sobic005G162500 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300 Sobic008G092600 Sobic008G092600 Sobic002G147600--Sobic008G092600 Sobic002G147600--Sobic008G098900 Sobic004G040500 Sobic004G040500 Sobic002G147600--Sobic004G040500 Sobic002G147600--Sobic008G085300 Sobic002G146300 Sobic002G146300 Sobic002G147600--Sobic002G146300 Sobic002G147600--Sobic002G335600 Sobic007G133700 Sobic007G133700 Sobic002G147600--Sobic007G133700 Sobic003G205200 Sobic003G205200 Sobic002G147600--Sobic003G205200 Sobic002G147600--Sobic001G370900 Sobic004G291900 Sobic004G291900 Sobic001G542500--Sobic004G291900 Sobic001G289800 Sobic001G289800 Sobic001G542500--Sobic001G289800 Sobic001G542500--Sobic008G085300 Sobic001G542500--Sobic004G276400 Sobic001G542500--Sobic008G098900 Sobic003G196300 Sobic003G196300 Sobic001G542500--Sobic003G196300 Sobic001G117200 Sobic001G117200 Sobic001G542500--Sobic001G117200 Sobic009G109200 Sobic009G109200 Sobic001G542500--Sobic009G109200 Sobic004G174200 Sobic004G174200 Sobic001G542500--Sobic004G174200 Sobic002G335600--Sobic006G184900 Sobic002G335600--Sobic005G162500 Sobic006G032300 Sobic006G032300 Sobic002G335600--Sobic006G032300 Sobic009G131300 Sobic009G131300 Sobic002G335600--Sobic009G131300 Sobic002G429300 Sobic002G429300 Sobic002G335600--Sobic002G429300 Sobic002G335600--Sobic001G493700 Sobic008G088872 Sobic008G088872 Sobic002G335600--Sobic008G088872 Sobic002G335600--Sobic004G040500 Sobic004G053500 Sobic004G053500 Sobic002G335600--Sobic004G053500 Sobic006G280000--Sobic007G054800 Sobic006G280000--Sobic001G542500 Sobic004G004300 Sobic004G004300 Sobic006G280000--Sobic004G004300 Sobic006G280000--Sobic002G256700 Sobic003G337300 Sobic003G337300 Sobic006G280000--Sobic003G337300 Sobic001G089600 Sobic001G089600 Sobic006G280000--Sobic001G089600 Sobic003G104000 Sobic003G104000 Sobic006G280000--Sobic003G104000 Sobic001G287500 Sobic001G287500 Sobic006G280000--Sobic001G287500 Sobic006G280000--Sobic001G117200 Sobic008G098900--Sobic001G370900 Sobic008G098900--Sobic008G085300 Sobic008G098900--Sobic001G117200 Sobic008G098900--Sobic003G205200 Sobic005G001000 Sobic005G001000 Sobic008G098900--Sobic005G001000 Sobic003G072200 Sobic003G072200 Sobic008G098900--Sobic003G072200 Sobic008G098900--Sobic005G162500 Sobic002G042600 Sobic002G042600 Sobic008G098900--Sobic002G042600 Sobic008G098900--Sobic004G276400 Sobic002G179400 Sobic002G179400 Sobic001G493700--Sobic002G179400 Sobic001G493700--Sobic005G162500 Sobic001G493700--Sobic006G184900 Sobic001G493700--Sobic002G133300 Sobic001G493700--Sobic009G131300 Sobic001G493700--Sobic002G429300 Sobic001G493700--Sobic002G042600 Sobic001G493700--Sobic002G335600 Sobic006G088200 Sobic006G088200 Sobic001G493700--Sobic006G088200 Sobic003G221400--Sobic007G054800 Sobic003G221400--Sobic005G162500 Sobic003G221400--Sobic001G493700 Sobic003G221400--Sobic001G110600 Sobic003G221400--Sobic001G004400 Sobic001G333100 Sobic001G333100 Sobic003G221400--Sobic001G333100 Sobic003G221400--Sobic002G179400 Sobic001G192000 Sobic001G192000 Sobic003G221400--Sobic001G192000 Sobic003G221400--Sobic008G085300
Octagon: transcription factors


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