Gene annotation
Transcriptome id Sobic.002G387500.1
Synonym SWA3, Sb02g040380, AtRH36, RH36
Functional annotation -
UniProt A0A097PN76 , C5X389
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF302
NCBI CDD -
KEGG Orthology K14778; DDX49, ATP-dependent RNA helicase DDX49/DBP8
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G16280 : RNA helicase 36
RAP-DB (Rice) LOC_Os07g43980.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a048873
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G193800 serine/threonine-protein kinase RIO-like, putative, expressed K07178: RIO kinase 1
2 Sobic.008G168000 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
3 Sobic.004G205200 PPR repeat containing protein, expressed -
4 Sobic.002G034400 expressed protein -
5 Sobic.001G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA methyltransferase, TrmH family protein, putative, expressed K03437: RNA methyltransferase, TrmH family
6 Sobic.010G004001 - -
7 Sobic.002G371500 RNA recognition motif containing protein, putative, expressed -
8 Sobic.006G166300 WRKY36, expressed -
9 Sobic.002G138500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 27329702)@expressed protein -
10 Sobic.002G325400 NUC153 domain containing protein, expressed -
11 Sobic.003G223200 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
12 Sobic.002G052500 - -
13 Sobic.001G419900 Up-reguralion under heat(PubMedID : 24916767)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
14 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
15 Sobic.002G302100 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
16 Sobic.007G043200 (31.4% identity with SbCCoAOMT/43.2% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed -
17 Sobic.001G178200 - -
18 Sobic.003G264000 cytidylyltransferase domain containing protein, expressed -
19 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G219400 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3


Gene co-expression network
sample Sobic002G387500 Sobic002G387500 Sobic007G193800 Sobic007G193800 Sobic002G387500--Sobic007G193800 Sobic008G168000 Sobic008G168000 Sobic002G387500--Sobic008G168000 Sobic004G205200 Sobic004G205200 Sobic002G387500--Sobic004G205200 Sobic002G034400 Sobic002G034400 Sobic002G387500--Sobic002G034400 Sobic001G134600 Sobic001G134600 Sobic002G387500--Sobic001G134600 Sobic010G004001 Sobic010G004001 Sobic002G387500--Sobic010G004001 Sobic002G371500 Sobic002G371500 Sobic002G387500--Sobic002G371500 Sobic006G166300 Sobic006G166300 Sobic002G387500--Sobic006G166300 Sobic002G138500 Sobic002G138500 Sobic002G387500--Sobic002G138500 Sobic007G193800--Sobic002G387500 Sobic007G193800--Sobic008G168000 Sobic001G418650 Sobic001G418650 Sobic007G193800--Sobic001G418650 Sobic002G364000 Sobic002G364000 Sobic007G193800--Sobic002G364000 Sobic001G178200 Sobic001G178200 Sobic007G193800--Sobic001G178200 Sobic007G193800--Sobic001G134600 Sobic002G052500 Sobic002G052500 Sobic007G193800--Sobic002G052500 Sobic001G339900 Sobic001G339900 Sobic007G193800--Sobic001G339900 Sobic007G043200 Sobic007G043200 Sobic007G193800--Sobic007G043200 Sobic008G168000--Sobic001G134600 Sobic008G168000--Sobic001G339900 Sobic009G070900 Sobic009G070900 Sobic008G168000--Sobic009G070900 Sobic001G378550 Sobic001G378550 Sobic008G168000--Sobic001G378550 Sobic008G168000--Sobic002G052500 Sobic001G049000 Sobic001G049000 Sobic008G168000--Sobic001G049000 Sobic008G168000--Sobic001G178200 Sobic008G168000--Sobic007G043200 Sobic006G272450 Sobic006G272450 Sobic008G168000--Sobic006G272450 Sobic004G356600 Sobic004G356600 Sobic004G205200--Sobic004G356600 Sobic004G205200--Sobic002G052500 Sobic006G260600 Sobic006G260600 Sobic004G205200--Sobic006G260600 Sobic007G072901 Sobic007G072901 Sobic004G205200--Sobic007G072901 Sobic001G063900 Sobic001G063900 Sobic004G205200--Sobic001G063900 Sobic003G343100 Sobic003G343100 Sobic004G205200--Sobic003G343100 Sobic009G194600 Sobic009G194600 Sobic004G205200--Sobic009G194600 Sobic004G205200--Sobic001G134600 Sobic004G205200--Sobic006G272450 Sobic002G034400--Sobic004G356600 Sobic005G097700 Sobic005G097700 Sobic002G034400--Sobic005G097700 Sobic002G356700 Sobic002G356700 Sobic002G034400--Sobic002G356700 Sobic006G228400 Sobic006G228400 Sobic002G034400--Sobic006G228400 Sobic002G034400--Sobic002G052500 Sobic006G090201 Sobic006G090201 Sobic002G034400--Sobic006G090201 Sobic002G034400--Sobic006G260600 Sobic002G004400 Sobic002G004400 Sobic002G034400--Sobic002G004400 Sobic003G245700 Sobic003G245700 Sobic002G034400--Sobic003G245700 Sobic001G134600--Sobic001G378550 Sobic001G134600--Sobic002G052500 Sobic001G419900 Sobic001G419900 Sobic001G134600--Sobic001G419900 Sobic001G134600--Sobic001G049000 Sobic001G134600--Sobic004G356600 Sobic001G267266 Sobic001G267266 Sobic001G134600--Sobic001G267266 Sobic001G134600--Sobic006G090201 Sobic001G134600--Sobic003G343100 Sobic001G134600--Sobic001G063900 Sobic010G004001--Sobic002G052500 Sobic010G004001--Sobic006G166300 Sobic007G210400 Sobic007G210400 Sobic010G004001--Sobic007G210400 Sobic010G004001--Sobic002G138500 Sobic010G004001--Sobic008G168000 Sobic005G037500 Sobic005G037500 Sobic010G004001--Sobic005G037500 Sobic010G004001--Sobic003G245700 Sobic002G037000 Sobic002G037000 Sobic010G004001--Sobic002G037000 Sobic006G185400 Sobic006G185400 Sobic010G004001--Sobic006G185400 Sobic003G363500 Sobic003G363500 Sobic002G371500--Sobic003G363500 Sobic005G029100 Sobic005G029100 Sobic002G371500--Sobic005G029100 Sobic003G223200 Sobic003G223200 Sobic002G371500--Sobic003G223200 Sobic002G103500 Sobic002G103500 Sobic002G371500--Sobic002G103500 Sobic009G165800 Sobic009G165800 Sobic002G371500--Sobic009G165800 Sobic009G207000 Sobic009G207000 Sobic002G371500--Sobic009G207000 Sobic003G395100 Sobic003G395100 Sobic002G371500--Sobic003G395100 Sobic003G369900 Sobic003G369900 Sobic002G371500--Sobic003G369900 Sobic001G047400 Sobic001G047400 Sobic002G371500--Sobic001G047400 Sobic003G423100 Sobic003G423100 Sobic006G166300--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic006G166300--Sobic003G178200 Sobic006G166300--Sobic003G245700 Sobic006G166300--Sobic007G072901 Sobic006G166300--Sobic002G037000 Sobic006G166300--Sobic005G037500 Sobic006G166300--Sobic007G210400 Sobic006G166300--Sobic006G090201 Sobic005G189400 Sobic005G189400 Sobic006G166300--Sobic005G189400 Sobic008G104500 Sobic008G104500 Sobic002G138500--Sobic008G104500 Sobic009G167300 Sobic009G167300 Sobic002G138500--Sobic009G167300 Sobic010G231400 Sobic010G231400 Sobic002G138500--Sobic010G231400 Sobic006G209100 Sobic006G209100 Sobic002G138500--Sobic006G209100 Sobic004G324900 Sobic004G324900 Sobic002G138500--Sobic004G324900 Sobic003G337100 Sobic003G337100 Sobic002G138500--Sobic003G337100 Sobic006G201200 Sobic006G201200 Sobic002G138500--Sobic006G201200 Sobic002G138500--Sobic005G037500 Sobic002G138500--Sobic006G185400
Octagon: transcription factors


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