Gene annotation
Transcriptome id Sobic.004G339000.1
Synonym Sb04g036660
Functional annotation TBC domain containing protein, expressed
UniProt C5XV75
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF206
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G28550 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os02g56570.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022547
Brachypodium PNT69409
Barley HORVU6Hr1G088820.2 , HORVU6Hr1G088820.3 , HORVU6Hr1G088820.1 , HORVU6Hr1G088820.6 , HORVU6Hr1G088820.7 , HORVU6Hr1G088820.4 , HORVU6Hr1G088820.5 , HORVU6Hr1G088820.8 , HORVU6Hr1G088820.9 , HORVU6Hr1G088820.10 , HORVU6Hr1G088820.11
Wheat TraesCS6A02G378200 , TraesCS6A02G378200 , TraesCS6B02G415900 , TraesCS6D02G362700 , TraesCS6D02G362700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G042400 expressed protein -
2 Sobic.010G018800 impaired sucrose induction 1, putative, expressed -
3 Sobic.003G051800 expressed protein K03024: RPC7, DNA-directed RNA polymerase III subunit RPC7
4 Sobic.010G256433 - -
5 Sobic.003G222400 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
6 Sobic.002G200500 pentatricopeptide, putative, expressed -
7 Sobic.009G236700 DUF1645 domain containing protein, putative, expressed -
8 Sobic.004G082000 expressed protein -
9 Sobic.006G272450 - -
10 Sobic.005G160900 DUF593 domain containing protein, expressed -
11 Sobic.005G138900 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
12 Sobic.001G483900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hydrolase protein, putative, expressed -
13 Sobic.002G034400 expressed protein -
14 Sobic.010G045200 expressed protein -
15 Sobic.007G085350 - -
16 Sobic.002G241900 GPI-anchored protein, putative, expressed -
17 Sobic.006G260600 OTU-like cysteine protease family protein, putative, expressed K13717: OTU domain-containing protein 3
18 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.004G237500 hydrolase, acting on carbon-nitrogen, putative, expressed -
20 Sobic.007G213200 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4


Gene co-expression network
sample Sobic004G339000 Sobic004G339000 Sobic001G042400 Sobic001G042400 Sobic004G339000--Sobic001G042400 Sobic010G018800 Sobic010G018800 Sobic004G339000--Sobic010G018800 Sobic003G051800 Sobic003G051800 Sobic004G339000--Sobic003G051800 Sobic010G256433 Sobic010G256433 Sobic004G339000--Sobic010G256433 Sobic003G222400 Sobic003G222400 Sobic004G339000--Sobic003G222400 Sobic002G200500 Sobic002G200500 Sobic004G339000--Sobic002G200500 Sobic009G236700 Sobic009G236700 Sobic004G339000--Sobic009G236700 Sobic004G082000 Sobic004G082000 Sobic004G339000--Sobic004G082000 Sobic006G272450 Sobic006G272450 Sobic004G339000--Sobic006G272450 Sobic001G042400--Sobic010G256433 Sobic001G042400--Sobic006G272450 Sobic001G042400--Sobic009G236700 Sobic009G070900 Sobic009G070900 Sobic001G042400--Sobic009G070900 Sobic001G042400--Sobic004G082000 Sobic001G042400--Sobic003G222400 Sobic008G127600 Sobic008G127600 Sobic001G042400--Sobic008G127600 Sobic003G084800 Sobic003G084800 Sobic001G042400--Sobic003G084800 Sobic005G160900 Sobic005G160900 Sobic001G042400--Sobic005G160900 Sobic003G365400 Sobic003G365400 Sobic010G018800--Sobic003G365400 Sobic010G018800--Sobic010G256433 Sobic010G018800--Sobic003G222400 Sobic002G254600 Sobic002G254600 Sobic010G018800--Sobic002G254600 Sobic010G018800--Sobic001G042400 Sobic010G018800--Sobic004G339000 Sobic010G018800--Sobic005G160900 Sobic007G085350 Sobic007G085350 Sobic010G018800--Sobic007G085350 Sobic010G018800--Sobic002G200500 Sobic006G260600 Sobic006G260600 Sobic003G051800--Sobic006G260600 Sobic002G356700 Sobic002G356700 Sobic003G051800--Sobic002G356700 Sobic004G098200 Sobic004G098200 Sobic003G051800--Sobic004G098200 Sobic009G233600 Sobic009G233600 Sobic003G051800--Sobic009G233600 Sobic003G051800--Sobic006G272450 Sobic002G052500 Sobic002G052500 Sobic003G051800--Sobic002G052500 Sobic001G019100 Sobic001G019100 Sobic003G051800--Sobic001G019100 Sobic009G010800 Sobic009G010800 Sobic003G051800--Sobic009G010800 Sobic006G201200 Sobic006G201200 Sobic003G051800--Sobic006G201200 Sobic010G256433--Sobic001G042400 Sobic010G256433--Sobic009G236700 Sobic010G256433--Sobic003G222400 Sobic010G256433--Sobic004G082000 Sobic010G256433--Sobic006G272450 Sobic010G256433--Sobic009G070900 Sobic007G213200 Sobic007G213200 Sobic010G256433--Sobic007G213200 Sobic005G138900 Sobic005G138900 Sobic010G256433--Sobic005G138900 Sobic010G256433--Sobic010G018800 Sobic003G222400--Sobic006G272450 Sobic003G222400--Sobic002G356700 Sobic003G222400--Sobic009G070900 Sobic003G222400--Sobic001G042400 Sobic003G222400--Sobic010G256433 Sobic003G222400--Sobic007G085350 Sobic003G222400--Sobic009G233600 Sobic004G356600 Sobic004G356600 Sobic003G222400--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic003G222400--Sobic002G034400 Sobic006G146900 Sobic006G146900 Sobic002G200500--Sobic006G146900 Sobic002G120200 Sobic002G120200 Sobic002G200500--Sobic002G120200 Sobic001G362400 Sobic001G362400 Sobic002G200500--Sobic001G362400 Sobic002G200500--Sobic003G222400 Sobic006G240300 Sobic006G240300 Sobic002G200500--Sobic006G240300 Sobic002G200500--Sobic004G339000 Sobic002G200500--Sobic010G018800 Sobic002G200500--Sobic010G256433 Sobic002G200500--Sobic002G034400 Sobic009G236700--Sobic004G082000 Sobic009G236700--Sobic007G213200 Sobic009G236700--Sobic005G138900 Sobic009G236700--Sobic003G084800 Sobic009G236700--Sobic001G042400 Sobic010G266100 Sobic010G266100 Sobic009G236700--Sobic010G266100 Sobic002G241900 Sobic002G241900 Sobic009G236700--Sobic002G241900 Sobic009G236700--Sobic010G256433 Sobic009G236700--Sobic005G160900 Sobic004G082000--Sobic009G236700 Sobic004G082000--Sobic005G138900 Sobic004G082000--Sobic007G213200 Sobic004G082000--Sobic002G241900 Sobic004G082000--Sobic005G160900 Sobic001G181200 Sobic001G181200 Sobic004G082000--Sobic001G181200 Sobic004G082000--Sobic010G266100 Sobic003G122900 Sobic003G122900 Sobic004G082000--Sobic003G122900 Sobic006G218100 Sobic006G218100 Sobic004G082000--Sobic006G218100 Sobic009G164200 Sobic009G164200 Sobic006G272450--Sobic009G164200 Sobic008G023500 Sobic008G023500 Sobic006G272450--Sobic008G023500 Sobic006G090201 Sobic006G090201 Sobic006G272450--Sobic006G090201 Sobic006G272450--Sobic009G010800 Sobic006G272450--Sobic009G070900 Sobic006G185400 Sobic006G185400 Sobic006G272450--Sobic006G185400 Sobic003G245700 Sobic003G245700 Sobic006G272450--Sobic003G245700 Sobic004G330500 Sobic004G330500 Sobic006G272450--Sobic004G330500 Sobic005G189400 Sobic005G189400 Sobic006G272450--Sobic005G189400
Octagon: transcription factors


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