Gene annotation
Transcriptome id Sobic.005G160900.1
Synonym
Functional annotation DUF593 domain containing protein, expressed
UniProt A0A1B6PSU8
Pfam PF04576
Panther DB PTHR31422 PTHR31422:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G06560 : Protein of unknown function, DUF593
RAP-DB (Rice) LOC_Os11g36740.1 : DUF593 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a017684 , Zm00025a015789 , Zm00025a006687
Brachypodium KQJ88137
Barley HORVU4Hr1G041430.4 , HORVU4Hr1G041430.5 , HORVU4Hr1G041430.6 , HORVU4Hr1G041430.7 , HORVU4Hr1G041430.1 , HORVU4Hr1G041430.2 , HORVU4Hr1G041430.3 , HORVU4Hr1G041430.8 , HORVU4Hr1G041430.9
Wheat TraesCS4A02G159000
Populus -


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cDNA sequences
Sobic.005G160900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G213200 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
2 Sobic.002G241900 GPI-anchored protein, putative, expressed -
3 Sobic.006G218100 expressed protein -
4 Sobic.010G096500 expressed protein -
5 Sobic.004G082000 expressed protein -
6 Sobic.003G270700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
7 Sobic.003G122900 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
8 Sobic.005G138900 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
9 Sobic.007G184300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aspartic proteinase-like protein 2 precursor, putative, expressed -
10 Sobic.006G208300 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR20 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
11 Sobic.009G236700 DUF1645 domain containing protein, putative, expressed -
12 Sobic.010G266100 endoglucanase, putative, expressed -
13 Sobic.004G261700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
14 Sobic.005G017400 ATCHX, putative, expressed -
15 Sobic.001G042400 expressed protein -
16 Sobic.001G167600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.006G115800 fasciclin domain containing protein, expressed -
18 Sobic.001G332400 DUF1336 domain containing protein, expressed -
19 Sobic.004G188201 - -
20 Sobic.001G156800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3


Gene co-expression network
sample Sobic005G160900 Sobic005G160900 Sobic007G213200 Sobic007G213200 Sobic005G160900--Sobic007G213200 Sobic002G241900 Sobic002G241900 Sobic005G160900--Sobic002G241900 Sobic006G218100 Sobic006G218100 Sobic005G160900--Sobic006G218100 Sobic010G096500 Sobic010G096500 Sobic005G160900--Sobic010G096500 Sobic004G082000 Sobic004G082000 Sobic005G160900--Sobic004G082000 Sobic003G270700 Sobic003G270700 Sobic005G160900--Sobic003G270700 Sobic003G122900 Sobic003G122900 Sobic005G160900--Sobic003G122900 Sobic005G138900 Sobic005G138900 Sobic005G160900--Sobic005G138900 Sobic007G184300 Sobic007G184300 Sobic005G160900--Sobic007G184300 Sobic007G213200--Sobic002G241900 Sobic007G213200--Sobic004G082000 Sobic007G213200--Sobic005G160900 Sobic010G266100 Sobic010G266100 Sobic007G213200--Sobic010G266100 Sobic007G213200--Sobic006G218100 Sobic007G213200--Sobic005G138900 Sobic007G213200--Sobic003G270700 Sobic009G236700 Sobic009G236700 Sobic007G213200--Sobic009G236700 Sobic007G213200--Sobic010G096500 Sobic002G241900--Sobic007G213200 Sobic002G241900--Sobic005G160900 Sobic002G241900--Sobic003G122900 Sobic002G241900--Sobic005G138900 Sobic002G241900--Sobic004G082000 Sobic002G241900--Sobic003G270700 Sobic002G241900--Sobic010G096500 Sobic006G208300 Sobic006G208300 Sobic002G241900--Sobic006G208300 Sobic002G241900--Sobic007G184300 Sobic006G218100--Sobic007G213200 Sobic006G218100--Sobic005G160900 Sobic006G218100--Sobic007G184300 Sobic006G218100--Sobic002G241900 Sobic006G218100--Sobic003G270700 Sobic006G218100--Sobic010G096500 Sobic006G218100--Sobic005G138900 Sobic006G218100--Sobic010G266100 Sobic001G536200 Sobic001G536200 Sobic006G218100--Sobic001G536200 Sobic010G096500--Sobic003G270700 Sobic010G096500--Sobic007G184300 Sobic010G096500--Sobic002G241900 Sobic010G096500--Sobic007G213200 Sobic010G096500--Sobic005G160900 Sobic001G541601 Sobic001G541601 Sobic010G096500--Sobic001G541601 Sobic010G096500--Sobic006G218100 Sobic006G115800 Sobic006G115800 Sobic010G096500--Sobic006G115800 Sobic006G264700 Sobic006G264700 Sobic010G096500--Sobic006G264700 Sobic004G082000--Sobic009G236700 Sobic004G082000--Sobic005G138900 Sobic004G082000--Sobic007G213200 Sobic004G082000--Sobic002G241900 Sobic004G082000--Sobic005G160900 Sobic001G181200 Sobic001G181200 Sobic004G082000--Sobic001G181200 Sobic004G082000--Sobic010G266100 Sobic004G082000--Sobic003G122900 Sobic004G082000--Sobic006G218100 Sobic003G270700--Sobic010G096500 Sobic003G270700--Sobic007G184300 Sobic003G270700--Sobic002G241900 Sobic003G270700--Sobic007G213200 Sobic003G270700--Sobic006G218100 Sobic003G270700--Sobic001G541601 Sobic003G270700--Sobic005G160900 Sobic003G270700--Sobic006G115800 Sobic003G270700--Sobic006G264700 Sobic003G122900--Sobic002G241900 Sobic003G122900--Sobic006G208300 Sobic001G167600 Sobic001G167600 Sobic003G122900--Sobic001G167600 Sobic001G156800 Sobic001G156800 Sobic003G122900--Sobic001G156800 Sobic006G097400 Sobic006G097400 Sobic003G122900--Sobic006G097400 Sobic006G095700 Sobic006G095700 Sobic003G122900--Sobic006G095700 Sobic001G068066 Sobic001G068066 Sobic003G122900--Sobic001G068066 Sobic006G074150 Sobic006G074150 Sobic003G122900--Sobic006G074150 Sobic001G332400 Sobic001G332400 Sobic003G122900--Sobic001G332400 Sobic005G138900--Sobic004G082000 Sobic005G138900--Sobic002G241900 Sobic005G138900--Sobic007G213200 Sobic005G138900--Sobic009G236700 Sobic005G138900--Sobic006G218100 Sobic005G138900--Sobic005G160900 Sobic005G017400 Sobic005G017400 Sobic005G138900--Sobic005G017400 Sobic005G138900--Sobic003G122900 Sobic005G138900--Sobic007G184300 Sobic007G184300--Sobic003G270700 Sobic007G184300--Sobic010G096500 Sobic007G184300--Sobic006G218100 Sobic007G184300--Sobic002G241900 Sobic004G323500 Sobic004G323500 Sobic007G184300--Sobic004G323500 Sobic007G184300--Sobic006G115800 Sobic007G184300--Sobic006G264700 Sobic007G184300--Sobic007G213200 Sobic007G184300--Sobic005G160900
Octagon: transcription factors


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