Gene annotation
Transcriptome id Sobic.003G122900.1
Synonym Sb03g010410
Functional annotation splicing factor 3 subunit 1, putative, expressed
UniProt A0A1B6Q2S7
Pfam PF01805
Panther DB PTHR15316 PTHR15316:SF1
NCBI CDD -
KEGG Orthology K12825; SF3A1, splicing factor 3A subunit 1
Gene Ontology GO:0006396; RNA processing GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT1G14650 : SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein
RAP-DB (Rice) LOC_Os02g14780.2 : splicing factor 3 subunit 1, putative, expressed
MaizeGDB (Corn) Zm00025a024017 , Zm00025a035269
Brachypodium -
Barley HORVU3Hr1G110920.4 , HORVU3Hr1G110920.1 , HORVU3Hr1G110920.2 , HORVU3Hr1G110920.3
Wheat TraesCS3B02G566900 , TraesCS3B02G211900 , TraesCS3B02G566900 , TraesCS3A02G503600 , TraesCS3D02G510100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G241900 GPI-anchored protein, putative, expressed -
2 Sobic.006G208300 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR20 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
3 Sobic.001G167600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.001G156800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
5 Sobic.006G097400 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
6 Sobic.006G095700 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
7 Sobic.001G068066 - -
8 Sobic.006G074150 - -
9 Sobic.001G332400 DUF1336 domain containing protein, expressed -
10 Sobic.009G250300 Ser/Thr protein phosphatase family protein, putative, expressed -
11 Sobic.009G207700 cell cycle control protein, putative, expressed -
12 Sobic.003G019450 - -
13 Sobic.001G337100 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17795: mitochondrial import inner membrane translocase subunit TIM17
14 Sobic.002G015900 OsFBLD4 - F-box, LRR and FBD domain containing protein, expressed -
15 Sobic.002G073600 transporter family protein, putative, expressed -
16 Sobic.005G043300 - -
17 Sobic.002G101600 - -
18 Sobic.005G214800 - -
19 Sobic.001G246001 - K10523: speckle-type POZ protein
20 Sobic.007G160501 - -


Gene co-expression network
sample Sobic003G122900 Sobic003G122900 Sobic002G241900 Sobic002G241900 Sobic003G122900--Sobic002G241900 Sobic006G208300 Sobic006G208300 Sobic003G122900--Sobic006G208300 Sobic001G167600 Sobic001G167600 Sobic003G122900--Sobic001G167600 Sobic001G156800 Sobic001G156800 Sobic003G122900--Sobic001G156800 Sobic006G097400 Sobic006G097400 Sobic003G122900--Sobic006G097400 Sobic006G095700 Sobic006G095700 Sobic003G122900--Sobic006G095700 Sobic001G068066 Sobic001G068066 Sobic003G122900--Sobic001G068066 Sobic006G074150 Sobic006G074150 Sobic003G122900--Sobic006G074150 Sobic001G332400 Sobic001G332400 Sobic003G122900--Sobic001G332400 Sobic007G213200 Sobic007G213200 Sobic002G241900--Sobic007G213200 Sobic005G160900 Sobic005G160900 Sobic002G241900--Sobic005G160900 Sobic002G241900--Sobic003G122900 Sobic005G138900 Sobic005G138900 Sobic002G241900--Sobic005G138900 Sobic004G082000 Sobic004G082000 Sobic002G241900--Sobic004G082000 Sobic003G270700 Sobic003G270700 Sobic002G241900--Sobic003G270700 Sobic010G096500 Sobic010G096500 Sobic002G241900--Sobic010G096500 Sobic002G241900--Sobic006G208300 Sobic007G184300 Sobic007G184300 Sobic002G241900--Sobic007G184300 Sobic006G208300--Sobic001G156800 Sobic008G055600 Sobic008G055600 Sobic006G208300--Sobic008G055600 Sobic005G144000 Sobic005G144000 Sobic006G208300--Sobic005G144000 Sobic001G279000 Sobic001G279000 Sobic006G208300--Sobic001G279000 Sobic009G242200 Sobic009G242200 Sobic006G208300--Sobic009G242200 Sobic006G208300--Sobic006G095700 Sobic006G208300--Sobic001G167600 Sobic001G112600 Sobic001G112600 Sobic006G208300--Sobic001G112600 Sobic006G208300--Sobic003G122900 Sobic010G124900 Sobic010G124900 Sobic001G167600--Sobic010G124900 Sobic006G204400 Sobic006G204400 Sobic001G167600--Sobic006G204400 Sobic001G106800 Sobic001G106800 Sobic001G167600--Sobic001G106800 Sobic002G111100 Sobic002G111100 Sobic001G167600--Sobic002G111100 Sobic001G167600--Sobic006G097400 Sobic001G167600--Sobic001G156800 Sobic001G167600--Sobic006G095700 Sobic008G103250 Sobic008G103250 Sobic001G167600--Sobic008G103250 Sobic002G030300 Sobic002G030300 Sobic001G167600--Sobic002G030300 Sobic003G290500 Sobic003G290500 Sobic001G156800--Sobic003G290500 Sobic001G192300 Sobic001G192300 Sobic001G156800--Sobic001G192300 Sobic002G380300 Sobic002G380300 Sobic001G156800--Sobic002G380300 Sobic004G290500 Sobic004G290500 Sobic001G156800--Sobic004G290500 Sobic006G105100 Sobic006G105100 Sobic001G156800--Sobic006G105100 Sobic010G216100 Sobic010G216100 Sobic001G156800--Sobic010G216100 Sobic006G069766 Sobic006G069766 Sobic001G156800--Sobic006G069766 Sobic007G035200 Sobic007G035200 Sobic001G156800--Sobic007G035200 Sobic005G006400 Sobic005G006400 Sobic001G156800--Sobic005G006400 Sobic007G129800 Sobic007G129800 Sobic006G097400--Sobic007G129800 Sobic010G107800 Sobic010G107800 Sobic006G097400--Sobic010G107800 Sobic002G414300 Sobic002G414300 Sobic006G097400--Sobic002G414300 Sobic005G054401 Sobic005G054401 Sobic006G097400--Sobic005G054401 Sobic001G269700 Sobic001G269700 Sobic006G097400--Sobic001G269700 Sobic001G269600 Sobic001G269600 Sobic006G097400--Sobic001G269600 Sobic001G269200 Sobic001G269200 Sobic006G097400--Sobic001G269200 Sobic001G269400 Sobic001G269400 Sobic006G097400--Sobic001G269400 Sobic001G094700 Sobic001G094700 Sobic006G097400--Sobic001G094700 Sobic002G283000 Sobic002G283000 Sobic006G095700--Sobic002G283000 Sobic004G137200 Sobic004G137200 Sobic006G095700--Sobic004G137200 Sobic001G540000 Sobic001G540000 Sobic006G095700--Sobic001G540000 Sobic004G025600 Sobic004G025600 Sobic006G095700--Sobic004G025600 Sobic002G091200 Sobic002G091200 Sobic006G095700--Sobic002G091200 Sobic002G106800 Sobic002G106800 Sobic006G095700--Sobic002G106800 Sobic003G173800 Sobic003G173800 Sobic006G095700--Sobic003G173800 Sobic009G098900 Sobic009G098900 Sobic006G095700--Sobic009G098900 Sobic005G010000 Sobic005G010000 Sobic006G095700--Sobic005G010000 Sobic005G078000 Sobic005G078000 Sobic001G068066--Sobic005G078000 Sobic009G207700 Sobic009G207700 Sobic001G068066--Sobic009G207700 Sobic001G068066--Sobic006G074150 Sobic002G190750 Sobic002G190750 Sobic001G068066--Sobic002G190750 Sobic003G019450 Sobic003G019450 Sobic001G068066--Sobic003G019450 Sobic003G133600 Sobic003G133600 Sobic001G068066--Sobic003G133600 Sobic001G029300 Sobic001G029300 Sobic001G068066--Sobic001G029300 Sobic001G163666 Sobic001G163666 Sobic001G068066--Sobic001G163666 Sobic009G250300 Sobic009G250300 Sobic001G068066--Sobic009G250300 Sobic006G074150--Sobic009G207700 Sobic001G093100 Sobic001G093100 Sobic006G074150--Sobic001G093100 Sobic005G040700 Sobic005G040700 Sobic006G074150--Sobic005G040700 Sobic001G130500 Sobic001G130500 Sobic006G074150--Sobic001G130500 Sobic010G051000 Sobic010G051000 Sobic006G074150--Sobic010G051000 Sobic001G306500 Sobic001G306500 Sobic006G074150--Sobic001G306500 Sobic003G175950 Sobic003G175950 Sobic006G074150--Sobic003G175950 Sobic007G222100 Sobic007G222100 Sobic006G074150--Sobic007G222100 Sobic009G203900 Sobic009G203900 Sobic006G074150--Sobic009G203900 Sobic008G191900 Sobic008G191900 Sobic001G332400--Sobic008G191900 Sobic004G031900 Sobic004G031900 Sobic001G332400--Sobic004G031900 Sobic006G115800 Sobic006G115800 Sobic001G332400--Sobic006G115800 Sobic002G359100 Sobic002G359100 Sobic001G332400--Sobic002G359100 Sobic009G176200 Sobic009G176200 Sobic001G332400--Sobic009G176200 Sobic010G187800 Sobic010G187800 Sobic001G332400--Sobic010G187800 Sobic002G405300 Sobic002G405300 Sobic001G332400--Sobic002G405300 Sobic003G061600 Sobic003G061600 Sobic001G332400--Sobic003G061600 Sobic009G249400 Sobic009G249400 Sobic001G332400--Sobic009G249400
Octagon: transcription factors


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