Gene annotation
Transcriptome id Sobic.006G208300.2
Synonym Sb06g027920, SbSAUR44, SbSAUR44;small auxin up RNA, small auxin up RNA
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsSAUR20 - Auxin-responsive SAUR gene family member, expressed
UniProt A0A1Z5RF02
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF7
NCBI CDD -
KEGG Orthology K14488; SAUR family protein
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT2G24400 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os04g51890.1 : OsSAUR20 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) Zm00025a020962 , Zm00025a056604 , Zm00025a009856 , Zm00025a032144 , Zm00025a056980
Brachypodium KQJ84465
Barley HORVU2Hr1G100360.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G156800 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
2 Sobic.008G055600 OsFBX430 - F-box domain containing protein, expressed -
3 Sobic.005G144000 glycosyltransferase, putative, expressed -
4 Sobic.001G279000 OsFBX382 - F-box domain containing protein, expressed -
5 Sobic.009G242200 CGMC_MAPKCMGC_2.3 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
6 Sobic.006G095700 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
7 Sobic.001G167600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.001G112600 Actin(PubMedID : 27325899)@protein and mRNA level correlates with dhurrin amount(PubMedID : 12114576)@actin, putative, expressed K10355: actin, other eukaryote
9 Sobic.003G122900 splicing factor 3 subunit 1, putative, expressed K12825: SF3A1, splicing factor 3A subunit 1
10 Sobic.002G170100 NAD dependent epimerase/dehydratase family protein, putative, expressed K01784: galE, UDP-glucose 4-epimerase
11 Sobic.003G441000 rhoGAP domain containing protein, expressed -
12 Sobic.002G381500 uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed K01087: trehalose 6-phosphate phosphatase
13 Sobic.002G404600 expressed protein -
14 Sobic.004G094400 - -
15 Sobic.002G176000 membrane protein, putative, expressed -
16 Sobic.002G380300 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
17 Sobic.005G170400 OsFBDUF58 - F-box and DUF domain containing protein, expressed -
18 Sobic.003G290500 profilin domain containing protein, expressed K05759: profilin
19 Sobic.004G253200 amino acid transporter, putative, expressed K14207: SLC38A2, solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2
20 Sobic.006G097400 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3


Gene co-expression network
sample Sobic006G208300 Sobic006G208300 Sobic001G156800 Sobic001G156800 Sobic006G208300--Sobic001G156800 Sobic008G055600 Sobic008G055600 Sobic006G208300--Sobic008G055600 Sobic005G144000 Sobic005G144000 Sobic006G208300--Sobic005G144000 Sobic001G279000 Sobic001G279000 Sobic006G208300--Sobic001G279000 Sobic009G242200 Sobic009G242200 Sobic006G208300--Sobic009G242200 Sobic006G095700 Sobic006G095700 Sobic006G208300--Sobic006G095700 Sobic001G167600 Sobic001G167600 Sobic006G208300--Sobic001G167600 Sobic001G112600 Sobic001G112600 Sobic006G208300--Sobic001G112600 Sobic003G122900 Sobic003G122900 Sobic006G208300--Sobic003G122900 Sobic003G290500 Sobic003G290500 Sobic001G156800--Sobic003G290500 Sobic001G192300 Sobic001G192300 Sobic001G156800--Sobic001G192300 Sobic002G380300 Sobic002G380300 Sobic001G156800--Sobic002G380300 Sobic004G290500 Sobic004G290500 Sobic001G156800--Sobic004G290500 Sobic006G105100 Sobic006G105100 Sobic001G156800--Sobic006G105100 Sobic010G216100 Sobic010G216100 Sobic001G156800--Sobic010G216100 Sobic006G069766 Sobic006G069766 Sobic001G156800--Sobic006G069766 Sobic007G035200 Sobic007G035200 Sobic001G156800--Sobic007G035200 Sobic005G006400 Sobic005G006400 Sobic001G156800--Sobic005G006400 Sobic004G253200 Sobic004G253200 Sobic008G055600--Sobic004G253200 Sobic008G055600--Sobic001G279000 Sobic008G055600--Sobic005G144000 Sobic009G119600 Sobic009G119600 Sobic008G055600--Sobic009G119600 Sobic001G342101 Sobic001G342101 Sobic008G055600--Sobic001G342101 Sobic003G187700 Sobic003G187700 Sobic008G055600--Sobic003G187700 Sobic003G244400 Sobic003G244400 Sobic008G055600--Sobic003G244400 Sobic004G358000 Sobic004G358000 Sobic008G055600--Sobic004G358000 Sobic003G441000 Sobic003G441000 Sobic008G055600--Sobic003G441000 Sobic005G144000--Sobic003G441000 Sobic002G170100 Sobic002G170100 Sobic005G144000--Sobic002G170100 Sobic008G122800 Sobic008G122800 Sobic005G144000--Sobic008G122800 Sobic005G144000--Sobic001G279000 Sobic005G144000--Sobic009G242200 Sobic001G503600 Sobic001G503600 Sobic005G144000--Sobic001G503600 Sobic004G180100 Sobic004G180100 Sobic005G144000--Sobic004G180100 Sobic008G071300 Sobic008G071300 Sobic005G144000--Sobic008G071300 Sobic002G404600 Sobic002G404600 Sobic005G144000--Sobic002G404600 Sobic003G013900 Sobic003G013900 Sobic001G279000--Sobic003G013900 Sobic001G279000--Sobic002G380300 Sobic008G176500 Sobic008G176500 Sobic001G279000--Sobic008G176500 Sobic003G019450 Sobic003G019450 Sobic001G279000--Sobic003G019450 Sobic007G091400 Sobic007G091400 Sobic001G279000--Sobic007G091400 Sobic006G236400 Sobic006G236400 Sobic001G279000--Sobic006G236400 Sobic001G370400 Sobic001G370400 Sobic001G279000--Sobic001G370400 Sobic010G016200 Sobic010G016200 Sobic001G279000--Sobic010G016200 Sobic003G304600 Sobic003G304600 Sobic001G279000--Sobic003G304600 Sobic009G242200--Sobic002G170100 Sobic009G242200--Sobic003G290500 Sobic009G242200--Sobic002G380300 Sobic006G115700 Sobic006G115700 Sobic009G242200--Sobic006G115700 Sobic009G242200--Sobic003G304600 Sobic009G242200--Sobic004G358000 Sobic009G242200--Sobic007G091400 Sobic003G297100 Sobic003G297100 Sobic009G242200--Sobic003G297100 Sobic009G242200--Sobic001G370400 Sobic002G283000 Sobic002G283000 Sobic006G095700--Sobic002G283000 Sobic004G137200 Sobic004G137200 Sobic006G095700--Sobic004G137200 Sobic001G540000 Sobic001G540000 Sobic006G095700--Sobic001G540000 Sobic004G025600 Sobic004G025600 Sobic006G095700--Sobic004G025600 Sobic002G091200 Sobic002G091200 Sobic006G095700--Sobic002G091200 Sobic002G106800 Sobic002G106800 Sobic006G095700--Sobic002G106800 Sobic003G173800 Sobic003G173800 Sobic006G095700--Sobic003G173800 Sobic009G098900 Sobic009G098900 Sobic006G095700--Sobic009G098900 Sobic005G010000 Sobic005G010000 Sobic006G095700--Sobic005G010000 Sobic010G124900 Sobic010G124900 Sobic001G167600--Sobic010G124900 Sobic006G204400 Sobic006G204400 Sobic001G167600--Sobic006G204400 Sobic001G106800 Sobic001G106800 Sobic001G167600--Sobic001G106800 Sobic002G111100 Sobic002G111100 Sobic001G167600--Sobic002G111100 Sobic006G097400 Sobic006G097400 Sobic001G167600--Sobic006G097400 Sobic001G167600--Sobic001G156800 Sobic001G167600--Sobic006G095700 Sobic008G103250 Sobic008G103250 Sobic001G167600--Sobic008G103250 Sobic002G030300 Sobic002G030300 Sobic001G167600--Sobic002G030300 Sobic005G050400 Sobic005G050400 Sobic001G112600--Sobic005G050400 Sobic001G112600--Sobic009G242200 Sobic001G112600--Sobic003G441000 Sobic001G112600--Sobic002G170100 Sobic001G414650 Sobic001G414650 Sobic001G112600--Sobic001G414650 Sobic001G112600--Sobic003G244400 Sobic008G055200 Sobic008G055200 Sobic001G112600--Sobic008G055200 Sobic001G112600--Sobic004G358000 Sobic001G112600--Sobic005G144000 Sobic002G241900 Sobic002G241900 Sobic003G122900--Sobic002G241900 Sobic003G122900--Sobic006G208300 Sobic003G122900--Sobic001G167600 Sobic003G122900--Sobic001G156800 Sobic003G122900--Sobic006G097400 Sobic003G122900--Sobic006G095700 Sobic001G068066 Sobic001G068066 Sobic003G122900--Sobic001G068066 Sobic006G074150 Sobic006G074150 Sobic003G122900--Sobic006G074150 Sobic001G332400 Sobic001G332400 Sobic003G122900--Sobic001G332400
Octagon: transcription factors


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