Gene annotation
Transcriptome id Sobic.001G156800.2
Synonym Sb01g013660, ZIP10
Functional annotation metal cation transporter, putative, expressed
UniProt C5WR81
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF78
NCBI CDD KOG1558; Fe2+/Zn2+ regulated transporter
KEGG Orthology K14709; SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G31260 : zinc transporter 10 precursor
RAP-DB (Rice) LOC_Os03g46470.1 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a009177 , Zm00025a007526
Brachypodium KQK13846
Barley HORVU4Hr1G003050.3 , HORVU4Hr1G003050.1 , HORVU4Hr1G003050.2 , HORVU4Hr1G003050.4
Wheat TraesCS7D02G098100 , TraesCS4A02G294200 , TraesCS4D02G017600 , TraesCS4A02G294300 , TraesCS4A02G403300 , TraesCS4B02G019300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G290500 profilin domain containing protein, expressed K05759: profilin
2 Sobic.001G192300 expressed protein -
3 Sobic.002G380300 ras-related protein, putative, expressed K07893: Ras-related protein Rab-6A
4 Sobic.004G290500 actin-depolymerizing factor, putative, expressed K05765: cofilin
5 Sobic.006G105100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
6 Sobic.010G216100 leaf senescence related protein, putative, expressed -
7 Sobic.006G069766 - -
8 Sobic.007G035200 - -
9 Sobic.005G006400 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
10 Sobic.004G094400 - -
11 Sobic.003G007650 - -
12 Sobic.010G240300 Os12bglu38 - beta-glucosidase/beta-mannosidase/exoglucanase homologue, expressed K05350: beta-glucosidase
13 Sobic.007G134501 - -
14 Sobic.008G086500 - -
15 Sobic.003G351100 - -
16 Sobic.010G090200 OsMADS63 - MADS-box family gene with MIKC , type-box, expressed -
17 Sobic.002G194201 - -
18 Sobic.009G110800 OsFBX430 - F-box domain containing protein, expressed -
19 Sobic.002G194300 expressed protein -
20 Sobic.005G006100 hypothetical protein -


Gene co-expression network
sample Sobic001G156800 Sobic001G156800 Sobic003G290500 Sobic003G290500 Sobic001G156800--Sobic003G290500 Sobic001G192300 Sobic001G192300 Sobic001G156800--Sobic001G192300 Sobic002G380300 Sobic002G380300 Sobic001G156800--Sobic002G380300 Sobic004G290500 Sobic004G290500 Sobic001G156800--Sobic004G290500 Sobic006G105100 Sobic006G105100 Sobic001G156800--Sobic006G105100 Sobic010G216100 Sobic010G216100 Sobic001G156800--Sobic010G216100 Sobic006G069766 Sobic006G069766 Sobic001G156800--Sobic006G069766 Sobic007G035200 Sobic007G035200 Sobic001G156800--Sobic007G035200 Sobic005G006400 Sobic005G006400 Sobic001G156800--Sobic005G006400 Sobic003G290500--Sobic002G380300 Sobic003G290500--Sobic006G105100 Sobic001G041600 Sobic001G041600 Sobic003G290500--Sobic001G041600 Sobic003G304600 Sobic003G304600 Sobic003G290500--Sobic003G304600 Sobic008G176500 Sobic008G176500 Sobic003G290500--Sobic008G176500 Sobic002G283200 Sobic002G283200 Sobic003G290500--Sobic002G283200 Sobic007G222100 Sobic007G222100 Sobic003G290500--Sobic007G222100 Sobic010G051000 Sobic010G051000 Sobic003G290500--Sobic010G051000 Sobic009G203900 Sobic009G203900 Sobic003G290500--Sobic009G203900 Sobic007G122600 Sobic007G122600 Sobic001G192300--Sobic007G122600 Sobic005G006100 Sobic005G006100 Sobic001G192300--Sobic005G006100 Sobic002G194201 Sobic002G194201 Sobic001G192300--Sobic002G194201 Sobic007G134501 Sobic007G134501 Sobic001G192300--Sobic007G134501 Sobic005G040100 Sobic005G040100 Sobic001G192300--Sobic005G040100 Sobic003G007650 Sobic003G007650 Sobic001G192300--Sobic003G007650 Sobic003G245300 Sobic003G245300 Sobic001G192300--Sobic003G245300 Sobic001G192300--Sobic005G006400 Sobic001G192300--Sobic007G035200 Sobic002G380300--Sobic006G105100 Sobic002G380300--Sobic004G290500 Sobic002G380300--Sobic008G176500 Sobic002G380300--Sobic001G041600 Sobic010G016200 Sobic010G016200 Sobic002G380300--Sobic010G016200 Sobic001G130500 Sobic001G130500 Sobic002G380300--Sobic001G130500 Sobic001G332000 Sobic001G332000 Sobic002G380300--Sobic001G332000 Sobic001G329200 Sobic001G329200 Sobic002G380300--Sobic001G329200 Sobic010G040400 Sobic010G040400 Sobic002G380300--Sobic010G040400 Sobic010G207800 Sobic010G207800 Sobic004G290500--Sobic010G207800 Sobic007G215200 Sobic007G215200 Sobic004G290500--Sobic007G215200 Sobic004G290500--Sobic005G006100 Sobic001G167300 Sobic001G167300 Sobic004G290500--Sobic001G167300 Sobic004G290500--Sobic001G192300 Sobic010G090200 Sobic010G090200 Sobic004G290500--Sobic010G090200 Sobic001G261416 Sobic001G261416 Sobic004G290500--Sobic001G261416 Sobic007G014000 Sobic007G014000 Sobic004G290500--Sobic007G014000 Sobic004G290500--Sobic010G216100 Sobic006G105100--Sobic002G380300 Sobic006G105100--Sobic004G290500 Sobic006G105100--Sobic001G261416 Sobic006G105100--Sobic001G329200 Sobic006G105100--Sobic010G090200 Sobic006G105100--Sobic001G041600 Sobic006G105100--Sobic001G332000 Sobic001G171300 Sobic001G171300 Sobic006G105100--Sobic001G171300 Sobic001G287400 Sobic001G287400 Sobic006G105100--Sobic001G287400 Sobic010G216100--Sobic007G014000 Sobic010G240300 Sobic010G240300 Sobic010G216100--Sobic010G240300 Sobic010G216100--Sobic010G090200 Sobic010G216100--Sobic001G261416 Sobic008G086500 Sobic008G086500 Sobic010G216100--Sobic008G086500 Sobic010G216100--Sobic005G006400 Sobic002G194300 Sobic002G194300 Sobic010G216100--Sobic002G194300 Sobic010G215000 Sobic010G215000 Sobic010G216100--Sobic010G215000 Sobic010G216100--Sobic010G207800 Sobic005G207700 Sobic005G207700 Sobic006G069766--Sobic005G207700 Sobic009G110800 Sobic009G110800 Sobic006G069766--Sobic009G110800 Sobic002G166000 Sobic002G166000 Sobic006G069766--Sobic002G166000 Sobic006G069766--Sobic001G041600 Sobic005G214800 Sobic005G214800 Sobic006G069766--Sobic005G214800 Sobic001G246001 Sobic001G246001 Sobic006G069766--Sobic001G246001 Sobic002G414000 Sobic002G414000 Sobic006G069766--Sobic002G414000 Sobic006G043101 Sobic006G043101 Sobic006G069766--Sobic006G043101 Sobic001G269200 Sobic001G269200 Sobic006G069766--Sobic001G269200 Sobic007G035200--Sobic005G006400 Sobic007G035200--Sobic003G007650 Sobic007G035200--Sobic008G086500 Sobic007G035200--Sobic010G240300 Sobic007G035200--Sobic007G134501 Sobic007G035200--Sobic002G194201 Sobic007G035200--Sobic005G006100 Sobic007G035200--Sobic007G014000 Sobic007G035200--Sobic010G216100 Sobic005G006400--Sobic007G035200 Sobic005G006400--Sobic003G007650 Sobic005G006400--Sobic010G240300 Sobic005G006400--Sobic008G086500 Sobic005G006400--Sobic002G194201 Sobic005G006400--Sobic007G134501 Sobic005G006400--Sobic005G006100 Sobic005G006400--Sobic007G014000 Sobic005G006400--Sobic010G216100
Octagon: transcription factors


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