Gene annotation
Transcriptome id Sobic.004G326000.1
Synonym Sb04g035570
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5XUC5
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF122
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G18650 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g54830.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a032968 , Zm00025a022427
Brachypodium PNT69325 , KQJ98490 , PNT68208 , PNT68209 , PNT68206 , PNT68207
Barley HORVU7Hr1G031290.2 , HORVU7Hr1G031290.3 , HORVU0Hr1G012910.1 , HORVU4Hr1G080840.1 , HORVU0Hr1G040490.4 , HORVU0Hr1G040490.1 , HORVU0Hr1G040490.3 , HORVU0Hr1G040490.2 , HORVU7Hr1G036380.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G139200 transferase family protein, putative, expressed -
2 Sobic.004G176800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.009G167500 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
4 Sobic.007G168400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G390600 sec20 domain containing protein, expressed K08494: novel plant SNARE
6 Sobic.002G050400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@LTPL78 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.001G009700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
8 Sobic.010G013100 expressed protein -
9 Sobic.004G249700 plastocyanin-like domain containing protein, putative, expressed -
10 Sobic.003G057366 - K11254: histone H4
11 Sobic.001G080600 expressed protein -
12 Sobic.001G216800 expressed protein -
13 Sobic.003G057600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.001G397700 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
16 Sobic.004G105100 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.003G286400 DUF623 domain containing protein, expressed -
18 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
20 Sobic.004G300600 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic004G326000 Sobic004G326000 Sobic002G139200 Sobic002G139200 Sobic004G326000--Sobic002G139200 Sobic004G176800 Sobic004G176800 Sobic004G326000--Sobic004G176800 Sobic009G167500 Sobic009G167500 Sobic004G326000--Sobic009G167500 Sobic007G168400 Sobic007G168400 Sobic004G326000--Sobic007G168400 Sobic002G390600 Sobic002G390600 Sobic004G326000--Sobic002G390600 Sobic002G050400 Sobic002G050400 Sobic004G326000--Sobic002G050400 Sobic001G009700 Sobic001G009700 Sobic004G326000--Sobic001G009700 Sobic010G013100 Sobic010G013100 Sobic004G326000--Sobic010G013100 Sobic004G249700 Sobic004G249700 Sobic004G326000--Sobic004G249700 Sobic002G139200--Sobic004G326000 Sobic002G279300 Sobic002G279300 Sobic002G139200--Sobic002G279300 Sobic002G139200--Sobic004G176800 Sobic001G077200 Sobic001G077200 Sobic002G139200--Sobic001G077200 Sobic003G300100 Sobic003G300100 Sobic002G139200--Sobic003G300100 Sobic002G139200--Sobic007G168400 Sobic002G139200--Sobic002G390600 Sobic001G008400 Sobic001G008400 Sobic002G139200--Sobic001G008400 Sobic001G458900 Sobic001G458900 Sobic002G139200--Sobic001G458900 Sobic003G151900 Sobic003G151900 Sobic004G176800--Sobic003G151900 Sobic006G201000 Sobic006G201000 Sobic004G176800--Sobic006G201000 Sobic003G324600 Sobic003G324600 Sobic004G176800--Sobic003G324600 Sobic008G099100 Sobic008G099100 Sobic004G176800--Sobic008G099100 Sobic006G134001 Sobic006G134001 Sobic004G176800--Sobic006G134001 Sobic005G035000 Sobic005G035000 Sobic004G176800--Sobic005G035000 Sobic003G256900 Sobic003G256900 Sobic004G176800--Sobic003G256900 Sobic004G176800--Sobic004G249700 Sobic004G099600 Sobic004G099600 Sobic004G176800--Sobic004G099600 Sobic009G167500--Sobic001G009700 Sobic003G057366 Sobic003G057366 Sobic009G167500--Sobic003G057366 Sobic001G416900 Sobic001G416900 Sobic009G167500--Sobic001G416900 Sobic004G259700 Sobic004G259700 Sobic009G167500--Sobic004G259700 Sobic002G276000 Sobic002G276000 Sobic009G167500--Sobic002G276000 Sobic009G167500--Sobic010G013100 Sobic003G057100 Sobic003G057100 Sobic009G167500--Sobic003G057100 Sobic001G054800 Sobic001G054800 Sobic009G167500--Sobic001G054800 Sobic003G127600 Sobic003G127600 Sobic009G167500--Sobic003G127600 Sobic007G168400--Sobic004G259700 Sobic007G168400--Sobic010G013100 Sobic007G168400--Sobic001G416900 Sobic004G099500 Sobic004G099500 Sobic007G168400--Sobic004G099500 Sobic007G168400--Sobic009G167500 Sobic007G168400--Sobic002G276000 Sobic003G057600 Sobic003G057600 Sobic007G168400--Sobic003G057600 Sobic007G168400--Sobic001G054800 Sobic007G168400--Sobic001G009700 Sobic004G133000 Sobic004G133000 Sobic002G390600--Sobic004G133000 Sobic002G390600--Sobic009G167500 Sobic001G397700 Sobic001G397700 Sobic002G390600--Sobic001G397700 Sobic006G003000 Sobic006G003000 Sobic002G390600--Sobic006G003000 Sobic002G005400 Sobic002G005400 Sobic002G390600--Sobic002G005400 Sobic001G496700 Sobic001G496700 Sobic002G390600--Sobic001G496700 Sobic004G189600 Sobic004G189600 Sobic002G390600--Sobic004G189600 Sobic008G156900 Sobic008G156900 Sobic002G390600--Sobic008G156900 Sobic004G107900 Sobic004G107900 Sobic002G390600--Sobic004G107900 Sobic009G006200 Sobic009G006200 Sobic002G050400--Sobic009G006200 Sobic002G050400--Sobic003G057600 Sobic002G050400--Sobic003G057366 Sobic002G050400--Sobic004G099500 Sobic010G057100 Sobic010G057100 Sobic002G050400--Sobic010G057100 Sobic009G015000 Sobic009G015000 Sobic002G050400--Sobic009G015000 Sobic002G050400--Sobic002G276000 Sobic002G050400--Sobic007G168400 Sobic003G322532 Sobic003G322532 Sobic002G050400--Sobic003G322532 Sobic001G009700--Sobic009G167500 Sobic001G009700--Sobic002G276000 Sobic001G009700--Sobic001G054800 Sobic001G009700--Sobic003G057100 Sobic002G210500 Sobic002G210500 Sobic001G009700--Sobic002G210500 Sobic001G009700--Sobic003G057366 Sobic001G009700--Sobic010G013100 Sobic001G009700--Sobic004G099500 Sobic003G338966 Sobic003G338966 Sobic001G009700--Sobic003G338966 Sobic003G300701 Sobic003G300701 Sobic010G013100--Sobic003G300701 Sobic010G013100--Sobic001G416900 Sobic001G417000 Sobic001G417000 Sobic010G013100--Sobic001G417000 Sobic010G013100--Sobic009G167500 Sobic010G013100--Sobic007G168400 Sobic010G013100--Sobic001G009700 Sobic001G216800 Sobic001G216800 Sobic010G013100--Sobic001G216800 Sobic004G300701 Sobic004G300701 Sobic010G013100--Sobic004G300701 Sobic010G013100--Sobic004G259700 Sobic001G239400 Sobic001G239400 Sobic004G249700--Sobic001G239400 Sobic001G005000 Sobic001G005000 Sobic004G249700--Sobic001G005000 Sobic010G194500 Sobic010G194500 Sobic004G249700--Sobic010G194500 Sobic009G008300 Sobic009G008300 Sobic004G249700--Sobic009G008300 Sobic007G133600 Sobic007G133600 Sobic004G249700--Sobic007G133600 Sobic009G076800 Sobic009G076800 Sobic004G249700--Sobic009G076800 Sobic006G166700 Sobic006G166700 Sobic004G249700--Sobic006G166700 Sobic004G249700--Sobic004G107900 Sobic006G018900 Sobic006G018900 Sobic004G249700--Sobic006G018900
Octagon: transcription factors


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