Gene annotation
Transcriptome id Sobic.002G279300.1
Synonym Sb02g031200
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5X6V3
Pfam PF13414
Panther DB PTHR36326 PTHR36326:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51280 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os09g36740.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049336 , Zm00025a014458
Brachypodium KQJ91236
Barley HORVU5Hr1G083920.13 , HORVU5Hr1G083920.15 , HORVU5Hr1G083920.14 , HORVU5Hr1G083920.17 , HORVU5Hr1G083920.16 , HORVU0Hr1G013610.3 , HORVU0Hr1G013610.2 , HORVU0Hr1G013610.1
Wheat TraesCS5B02G330200 , TraesCS5A02G330000 , TraesCS5D02G335800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
2 Sobic.001G458900 targeting protein-related, putative, expressed -
3 Sobic.001G331100 expressed protein -
4 Sobic.003G047200 expressed protein -
5 Sobic.003G300100 bZIP transcription factor domain containing protein, expressed -
6 Sobic.002G293800 expressed protein -
7 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
8 Sobic.001G077200 BTBN10 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
9 Sobic.010G234800 expressed protein -
10 Sobic.001G008400 brevis radix, putative, expressed -
11 Sobic.008G156900 similar to Auxin-responsive protein IAA30(PubMedID : 29862293)@"domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf"(PubMedID : 20499123)@OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
12 Sobic.008G083300 expressed protein -
13 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
14 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
15 Sobic.003G300701 - -
16 Sobic.002G139200 transferase family protein, putative, expressed -
17 Sobic.002G221400 ZOS9-14 - C2H2 zinc finger protein, expressed -
18 Sobic.004G198200 expressed protein -
19 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
20 Sobic.004G227000 expressed protein -


Gene co-expression network
sample Sobic002G279300 Sobic002G279300 Sobic004G115600 Sobic004G115600 Sobic002G279300--Sobic004G115600 Sobic001G458900 Sobic001G458900 Sobic002G279300--Sobic001G458900 Sobic001G331100 Sobic001G331100 Sobic002G279300--Sobic001G331100 Sobic003G047200 Sobic003G047200 Sobic002G279300--Sobic003G047200 Sobic003G300100 Sobic003G300100 Sobic002G279300--Sobic003G300100 Sobic002G293800 Sobic002G293800 Sobic002G279300--Sobic002G293800 Sobic001G098900 Sobic001G098900 Sobic002G279300--Sobic001G098900 Sobic001G077200 Sobic001G077200 Sobic002G279300--Sobic001G077200 Sobic010G234800 Sobic010G234800 Sobic002G279300--Sobic010G234800 Sobic004G115600--Sobic002G279300 Sobic004G115600--Sobic001G331100 Sobic006G278400 Sobic006G278400 Sobic004G115600--Sobic006G278400 Sobic006G108000 Sobic006G108000 Sobic004G115600--Sobic006G108000 Sobic004G227000 Sobic004G227000 Sobic004G115600--Sobic004G227000 Sobic004G115600--Sobic001G458900 Sobic003G301200 Sobic003G301200 Sobic004G115600--Sobic003G301200 Sobic004G115600--Sobic003G300100 Sobic004G115600--Sobic003G047200 Sobic001G458900--Sobic002G279300 Sobic001G458900--Sobic003G047200 Sobic001G458900--Sobic002G293800 Sobic001G458900--Sobic010G234800 Sobic001G458900--Sobic004G115600 Sobic001G458900--Sobic001G098900 Sobic010G215300 Sobic010G215300 Sobic001G458900--Sobic010G215300 Sobic001G284900 Sobic001G284900 Sobic001G458900--Sobic001G284900 Sobic001G458900--Sobic001G077200 Sobic001G331100--Sobic004G115600 Sobic001G331100--Sobic006G108000 Sobic001G331100--Sobic002G279300 Sobic009G254400 Sobic009G254400 Sobic001G331100--Sobic009G254400 Sobic006G155900 Sobic006G155900 Sobic001G331100--Sobic006G155900 Sobic008G163800 Sobic008G163800 Sobic001G331100--Sobic008G163800 Sobic003G406500 Sobic003G406500 Sobic001G331100--Sobic003G406500 Sobic003G040100 Sobic003G040100 Sobic001G331100--Sobic003G040100 Sobic001G263500 Sobic001G263500 Sobic001G331100--Sobic001G263500 Sobic003G047200--Sobic010G234800 Sobic003G047200--Sobic001G098900 Sobic003G047200--Sobic010G215300 Sobic003G047200--Sobic001G458900 Sobic003G047200--Sobic001G284900 Sobic003G414400 Sobic003G414400 Sobic003G047200--Sobic003G414400 Sobic003G047200--Sobic006G155900 Sobic010G202100 Sobic010G202100 Sobic003G047200--Sobic010G202100 Sobic003G047200--Sobic002G279300 Sobic003G300100--Sobic002G279300 Sobic008G156900 Sobic008G156900 Sobic003G300100--Sobic008G156900 Sobic001G397700 Sobic001G397700 Sobic003G300100--Sobic001G397700 Sobic003G300100--Sobic004G115600 Sobic003G300100--Sobic001G331100 Sobic001G253900 Sobic001G253900 Sobic003G300100--Sobic001G253900 Sobic003G300100--Sobic001G458900 Sobic008G083300 Sobic008G083300 Sobic003G300100--Sobic008G083300 Sobic001G451800 Sobic001G451800 Sobic003G300100--Sobic001G451800 Sobic002G293800--Sobic010G234800 Sobic002G293800--Sobic001G098900 Sobic002G293800--Sobic001G458900 Sobic002G293800--Sobic010G215300 Sobic002G293800--Sobic002G279300 Sobic008G114500 Sobic008G114500 Sobic002G293800--Sobic008G114500 Sobic002G293800--Sobic003G047200 Sobic002G293800--Sobic010G202100 Sobic002G293800--Sobic003G414400 Sobic001G098900--Sobic010G215300 Sobic001G098900--Sobic010G234800 Sobic001G098900--Sobic010G202100 Sobic001G244400 Sobic001G244400 Sobic001G098900--Sobic001G244400 Sobic001G098900--Sobic003G047200 Sobic001G098900--Sobic003G414400 Sobic001G098900--Sobic002G293800 Sobic001G098900--Sobic008G114500 Sobic001G098900--Sobic006G155900 Sobic001G077200--Sobic001G458900 Sobic001G077200--Sobic002G279300 Sobic001G077200--Sobic002G293800 Sobic001G077200--Sobic004G115600 Sobic001G077200--Sobic003G300100 Sobic002G139200 Sobic002G139200 Sobic001G077200--Sobic002G139200 Sobic001G077200--Sobic001G284900 Sobic001G077200--Sobic003G047200 Sobic003G387600 Sobic003G387600 Sobic001G077200--Sobic003G387600 Sobic010G234800--Sobic001G098900 Sobic010G234800--Sobic010G215300 Sobic010G234800--Sobic010G202100 Sobic010G234800--Sobic003G047200 Sobic010G234800--Sobic008G114500 Sobic010G234800--Sobic002G293800 Sobic007G017700 Sobic007G017700 Sobic010G234800--Sobic007G017700 Sobic010G234800--Sobic003G414400 Sobic001G140600 Sobic001G140600 Sobic010G234800--Sobic001G140600
Octagon: transcription factors


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