Gene annotation
Transcriptome id Sobic.001G008400.1,Sobic.001G008400.2
Synonym Sb01g000840, BRX, NLM9
Functional annotation brevis radix, putative, expressed
UniProt A0A1Z5S3S0 , C5WS08
Pfam PF08381 PF13713 PF08381
Panther DB PTHR22870
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31880 : DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein
RAP-DB (Rice) LOC_Os03g63650.1 : brevis radix, putative, expressed
MaizeGDB (Corn) Zm00025a021675 , Zm00025a009082 , Zm00025a047187
Brachypodium KQK12042 , KQK12043 , KQJ90442
Barley HORVU0Hr1G016680.3 , HORVU0Hr1G016680.2 , HORVU0Hr1G016680.7 , HORVU0Hr1G016680.6 , HORVU0Hr1G016680.5 , HORVU0Hr1G016680.4 , HORVU0Hr1G016680.9 , HORVU0Hr1G016680.1 , HORVU6Hr1G068280.1 , HORVU6Hr1G068280.2 , HORVU6Hr1G068280.3 , HORVU5Hr1G123400.3 , HORVU5Hr1G123400.2 , HORVU5Hr1G123400.1 , HORVU5Hr1G123400.7 , HORVU5Hr1G123400.5 , HORVU5Hr1G123400.4 , HORVU6Hr1G068350.2 , HORVU6Hr1G068350.3 , HORVU6Hr1G068350.1 , HORVU6Hr1G068350.4 , HORVU6Hr1G068350.5 , HORVU5Hr1G123400.6 , HORVU0Hr1G016680.12 , HORVU0Hr1G016680.14 , HORVU5Hr1G123400.8 , HORVU0Hr1G016680.13 , HORVU0Hr1G016680.11 , HORVU0Hr1G016680.10 , HORVU0Hr1G016680.16 , HORVU0Hr1G016680.8 , HORVU0Hr1G016680.15
Wheat TraesCS4A02G324700 , TraesCS4A02G324700 , TraesCS4A02G324700 , TraesCS5D02G213500 , TraesCS5B02G205700 , TraesCS5D02G555400 , TraesCS5D02G555400 , TraesCS5B02G537300 , TraesCS2D02G435400 , TraesCS5A02G207400 , TraesCS2A02G438800 , TraesCS6A02G269500 , TraesCS6A02G269500 , TraesCS6D02G245400 , TraesCS6D02G245400 , TraesCS2B02G458600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G178901 - -
2 Sobic.009G206800 WRKY23, expressed -
3 Sobic.002G005300 dirigent, putative, expressed -
4 Sobic.010G014200 expressed protein -
5 Sobic.006G278400 ZOS4-14 - C2H2 zinc finger protein, expressed -
6 Sobic.007G184700 expressed protein -
7 Sobic.007G052600 expressed protein -
8 Sobic.010G161300 receptor-like kinase, putative, expressed -
9 Sobic.002G279300 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.004G115600 HMG1/2, putative, expressed K09273: upstream-binding transcription factor
11 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
12 Sobic.008G061000 expressed protein -
13 Sobic.004G227000 expressed protein -
14 Sobic.002G370100 proline-rich protein, putative, expressed -
15 Sobic.001G180300 expressed protein -
16 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
17 Sobic.008G083300 expressed protein -
18 Sobic.003G040500 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed K03004: DNA-directed RNA polymerase I subunit RPA43
19 Sobic.007G081300 peptide transporter PTR2, putative, expressed -
20 Sobic.004G128600 salt stress root protein RS1, putative, expressed -


Gene co-expression network
sample Sobic001G008400 Sobic001G008400 Sobic008G178901 Sobic008G178901 Sobic001G008400--Sobic008G178901 Sobic009G206800 Sobic009G206800 Sobic001G008400--Sobic009G206800 Sobic002G005300 Sobic002G005300 Sobic001G008400--Sobic002G005300 Sobic010G014200 Sobic010G014200 Sobic001G008400--Sobic010G014200 Sobic006G278400 Sobic006G278400 Sobic001G008400--Sobic006G278400 Sobic007G184700 Sobic007G184700 Sobic001G008400--Sobic007G184700 Sobic007G052600 Sobic007G052600 Sobic001G008400--Sobic007G052600 Sobic010G161300 Sobic010G161300 Sobic001G008400--Sobic010G161300 Sobic002G279300 Sobic002G279300 Sobic001G008400--Sobic002G279300 Sobic010G155500 Sobic010G155500 Sobic008G178901--Sobic010G155500 Sobic008G178901--Sobic007G052600 Sobic008G178901--Sobic002G005300 Sobic008G178901--Sobic009G206800 Sobic004G329100 Sobic004G329100 Sobic008G178901--Sobic004G329100 Sobic008G061000 Sobic008G061000 Sobic008G178901--Sobic008G061000 Sobic008G178901--Sobic010G014200 Sobic008G178901--Sobic001G008400 Sobic006G197000 Sobic006G197000 Sobic008G178901--Sobic006G197000 Sobic009G206800--Sobic007G052600 Sobic006G009900 Sobic006G009900 Sobic009G206800--Sobic006G009900 Sobic009G206800--Sobic002G005300 Sobic009G206800--Sobic008G178901 Sobic009G206800--Sobic006G197000 Sobic009G206800--Sobic008G061000 Sobic009G206800--Sobic001G008400 Sobic009G206800--Sobic010G161300 Sobic009G123000 Sobic009G123000 Sobic009G206800--Sobic009G123000 Sobic002G005300--Sobic008G178901 Sobic002G005300--Sobic007G052600 Sobic002G005300--Sobic009G206800 Sobic002G005300--Sobic001G008400 Sobic004G358700 Sobic004G358700 Sobic002G005300--Sobic004G358700 Sobic002G005300--Sobic008G061000 Sobic008G088860 Sobic008G088860 Sobic002G005300--Sobic008G088860 Sobic002G005300--Sobic009G123000 Sobic002G005300--Sobic006G009900 Sobic001G180300 Sobic001G180300 Sobic010G014200--Sobic001G180300 Sobic010G014200--Sobic004G329100 Sobic004G128600 Sobic004G128600 Sobic010G014200--Sobic004G128600 Sobic010G178900 Sobic010G178900 Sobic010G014200--Sobic010G178900 Sobic010G014200--Sobic006G278400 Sobic008G163600 Sobic008G163600 Sobic010G014200--Sobic008G163600 Sobic005G226900 Sobic005G226900 Sobic010G014200--Sobic005G226900 Sobic004G227000 Sobic004G227000 Sobic010G014200--Sobic004G227000 Sobic001G541900 Sobic001G541900 Sobic010G014200--Sobic001G541900 Sobic006G278400--Sobic004G227000 Sobic006G278400--Sobic001G180300 Sobic003G301200 Sobic003G301200 Sobic006G278400--Sobic003G301200 Sobic006G278400--Sobic008G163600 Sobic007G081300 Sobic007G081300 Sobic006G278400--Sobic007G081300 Sobic006G187600 Sobic006G187600 Sobic006G278400--Sobic006G187600 Sobic006G278400--Sobic010G014200 Sobic002G425900 Sobic002G425900 Sobic006G278400--Sobic002G425900 Sobic006G278400--Sobic004G128600 Sobic002G314500 Sobic002G314500 Sobic007G184700--Sobic002G314500 Sobic007G184700--Sobic001G008400 Sobic002G206000 Sobic002G206000 Sobic007G184700--Sobic002G206000 Sobic006G280300 Sobic006G280300 Sobic007G184700--Sobic006G280300 Sobic007G184700--Sobic002G005300 Sobic007G184700--Sobic008G178901 Sobic002G284701 Sobic002G284701 Sobic007G184700--Sobic002G284701 Sobic006G133650 Sobic006G133650 Sobic007G184700--Sobic006G133650 Sobic007G184700--Sobic010G161300 Sobic007G052600--Sobic008G061000 Sobic007G052600--Sobic010G155500 Sobic007G052600--Sobic008G178901 Sobic007G052600--Sobic006G197000 Sobic007G052600--Sobic009G206800 Sobic007G052600--Sobic004G128600 Sobic007G052600--Sobic004G329100 Sobic001G193400 Sobic001G193400 Sobic007G052600--Sobic001G193400 Sobic001G200500 Sobic001G200500 Sobic007G052600--Sobic001G200500 Sobic001G148600 Sobic001G148600 Sobic010G161300--Sobic001G148600 Sobic010G161300--Sobic004G128600 Sobic010G161300--Sobic006G197000 Sobic008G031600 Sobic008G031600 Sobic010G161300--Sobic008G031600 Sobic003G201400 Sobic003G201400 Sobic010G161300--Sobic003G201400 Sobic010G161300--Sobic005G226900 Sobic010G161300--Sobic010G014200 Sobic010G161300--Sobic006G278400 Sobic010G161300--Sobic004G227000 Sobic004G115600 Sobic004G115600 Sobic002G279300--Sobic004G115600 Sobic001G458900 Sobic001G458900 Sobic002G279300--Sobic001G458900 Sobic001G331100 Sobic001G331100 Sobic002G279300--Sobic001G331100 Sobic003G047200 Sobic003G047200 Sobic002G279300--Sobic003G047200 Sobic003G300100 Sobic003G300100 Sobic002G279300--Sobic003G300100 Sobic002G293800 Sobic002G293800 Sobic002G279300--Sobic002G293800 Sobic001G098900 Sobic001G098900 Sobic002G279300--Sobic001G098900 Sobic001G077200 Sobic001G077200 Sobic002G279300--Sobic001G077200 Sobic010G234800 Sobic010G234800 Sobic002G279300--Sobic010G234800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.