Gene annotation
Transcriptome id Sobic.009G206800.1
Synonym WRKY56, ATWRKY56, Sb09g026350
Functional annotation WRKY23, expressed
UniProt C5Z1G4
Pfam PF03106
Panther DB PTHR31221 PTHR31221:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G64000 : WRKY DNA-binding protein 56
RAP-DB (Rice) LOC_Os01g53260.1 : WRKY23, expressed
MaizeGDB (Corn) Zm00025a039749 , Zm00025a044883 , Zm00025a044278 , Zm00025a038003 , Zm00025a027025 , Zm00025a040097
Brachypodium KQK10385 , KQK09603 , KQK21180 , PNT63638 , KQJ88517 , KQK05263
Barley HORVU3Hr1G088200.3 , HORVU3Hr1G088200.1 , HORVU3Hr1G088200.6 , HORVU3Hr1G088200.5 , HORVU3Hr1G088200.4 , HORVU3Hr1G088200.9 , HORVU3Hr1G088200.8 , HORVU1Hr1G081570.1 , HORVU1Hr1G081570.2 , HORVU1Hr1G081570.4 , HORVU3Hr1G069660.1 , HORVU3Hr1G069660.2 , HORVU2Hr1G001780.1 , HORVU2Hr1G001780.3
Wheat TraesCS3D02G341100 , TraesCS3A02G347500 , TraesCS1D02G351600 , TraesCS3D02G280200 , TraesCS2B02G010500 , TraesCS3B02G379200 , TraesCS3A02G280400 , TraesCS1A02G348600 , TraesCS2D02G011700 , TraesCS3B02G379200 , TraesCS2A02G011000 , TraesCS1B02G363200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G052600 expressed protein -
2 Sobic.006G009900 expressed protein -
3 Sobic.002G005300 dirigent, putative, expressed -
4 Sobic.008G178901 - -
5 Sobic.006G197000 heavy-metal-associated domain-containing protein, putative, expressed -
6 Sobic.008G061000 expressed protein -
7 Sobic.001G008400 brevis radix, putative, expressed -
8 Sobic.010G161300 receptor-like kinase, putative, expressed -
9 Sobic.009G123000 expressed protein -
10 Sobic.008G083300 expressed protein -
11 Sobic.004G128600 salt stress root protein RS1, putative, expressed -
12 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -
13 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
14 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
16 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
17 Sobic.006G003000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
18 Sobic.001G148600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed -
19 Sobic.004G358700 armadillo/beta-catenin repeat family protein, putative, expressed -
20 Sobic.010G014200 expressed protein -


Gene co-expression network
sample Sobic009G206800 Sobic009G206800 Sobic007G052600 Sobic007G052600 Sobic009G206800--Sobic007G052600 Sobic006G009900 Sobic006G009900 Sobic009G206800--Sobic006G009900 Sobic002G005300 Sobic002G005300 Sobic009G206800--Sobic002G005300 Sobic008G178901 Sobic008G178901 Sobic009G206800--Sobic008G178901 Sobic006G197000 Sobic006G197000 Sobic009G206800--Sobic006G197000 Sobic008G061000 Sobic008G061000 Sobic009G206800--Sobic008G061000 Sobic001G008400 Sobic001G008400 Sobic009G206800--Sobic001G008400 Sobic010G161300 Sobic010G161300 Sobic009G206800--Sobic010G161300 Sobic009G123000 Sobic009G123000 Sobic009G206800--Sobic009G123000 Sobic007G052600--Sobic008G061000 Sobic010G155500 Sobic010G155500 Sobic007G052600--Sobic010G155500 Sobic007G052600--Sobic008G178901 Sobic007G052600--Sobic006G197000 Sobic007G052600--Sobic009G206800 Sobic004G128600 Sobic004G128600 Sobic007G052600--Sobic004G128600 Sobic004G329100 Sobic004G329100 Sobic007G052600--Sobic004G329100 Sobic001G193400 Sobic001G193400 Sobic007G052600--Sobic001G193400 Sobic001G200500 Sobic001G200500 Sobic007G052600--Sobic001G200500 Sobic006G009900--Sobic009G206800 Sobic008G083300 Sobic008G083300 Sobic006G009900--Sobic008G083300 Sobic006G009900--Sobic002G005300 Sobic006G009900--Sobic008G178901 Sobic008G183500 Sobic008G183500 Sobic006G009900--Sobic008G183500 Sobic006G003000 Sobic006G003000 Sobic006G009900--Sobic006G003000 Sobic004G007800 Sobic004G007800 Sobic006G009900--Sobic004G007800 Sobic001G189500 Sobic001G189500 Sobic006G009900--Sobic001G189500 Sobic006G009900--Sobic007G052600 Sobic002G005300--Sobic008G178901 Sobic002G005300--Sobic007G052600 Sobic002G005300--Sobic009G206800 Sobic002G005300--Sobic001G008400 Sobic004G358700 Sobic004G358700 Sobic002G005300--Sobic004G358700 Sobic002G005300--Sobic008G061000 Sobic008G088860 Sobic008G088860 Sobic002G005300--Sobic008G088860 Sobic002G005300--Sobic009G123000 Sobic002G005300--Sobic006G009900 Sobic008G178901--Sobic010G155500 Sobic008G178901--Sobic007G052600 Sobic008G178901--Sobic002G005300 Sobic008G178901--Sobic009G206800 Sobic008G178901--Sobic004G329100 Sobic008G178901--Sobic008G061000 Sobic010G014200 Sobic010G014200 Sobic008G178901--Sobic010G014200 Sobic008G178901--Sobic001G008400 Sobic008G178901--Sobic006G197000 Sobic006G197000--Sobic004G128600 Sobic003G201400 Sobic003G201400 Sobic006G197000--Sobic003G201400 Sobic010G224800 Sobic010G224800 Sobic006G197000--Sobic010G224800 Sobic010G114400 Sobic010G114400 Sobic006G197000--Sobic010G114400 Sobic007G001300 Sobic007G001300 Sobic006G197000--Sobic007G001300 Sobic002G156300 Sobic002G156300 Sobic006G197000--Sobic002G156300 Sobic009G031100 Sobic009G031100 Sobic006G197000--Sobic009G031100 Sobic003G109400 Sobic003G109400 Sobic006G197000--Sobic003G109400 Sobic006G197000--Sobic001G200500 Sobic008G061000--Sobic001G200500 Sobic008G061000--Sobic004G329100 Sobic008G061000--Sobic004G128600 Sobic008G061000--Sobic006G197000 Sobic008G133100 Sobic008G133100 Sobic008G061000--Sobic008G133100 Sobic001G541900 Sobic001G541900 Sobic008G061000--Sobic001G541900 Sobic008G061000--Sobic001G193400 Sobic008G061000--Sobic007G001300 Sobic003G350100 Sobic003G350100 Sobic008G061000--Sobic003G350100 Sobic001G008400--Sobic008G178901 Sobic001G008400--Sobic009G206800 Sobic001G008400--Sobic002G005300 Sobic001G008400--Sobic010G014200 Sobic006G278400 Sobic006G278400 Sobic001G008400--Sobic006G278400 Sobic007G184700 Sobic007G184700 Sobic001G008400--Sobic007G184700 Sobic001G008400--Sobic007G052600 Sobic001G008400--Sobic010G161300 Sobic002G279300 Sobic002G279300 Sobic001G008400--Sobic002G279300 Sobic001G148600 Sobic001G148600 Sobic010G161300--Sobic001G148600 Sobic010G161300--Sobic004G128600 Sobic010G161300--Sobic006G197000 Sobic008G031600 Sobic008G031600 Sobic010G161300--Sobic008G031600 Sobic010G161300--Sobic003G201400 Sobic005G226900 Sobic005G226900 Sobic010G161300--Sobic005G226900 Sobic010G161300--Sobic010G014200 Sobic010G161300--Sobic006G278400 Sobic004G227000 Sobic004G227000 Sobic010G161300--Sobic004G227000 Sobic003G127600 Sobic003G127600 Sobic009G123000--Sobic003G127600 Sobic001G416800 Sobic001G416800 Sobic009G123000--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic009G123000--Sobic005G198300 Sobic009G123000--Sobic006G003000 Sobic001G416900 Sobic001G416900 Sobic009G123000--Sobic001G416900 Sobic009G123000--Sobic001G148600 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic009G123000--Sobic010G161300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.