Gene annotation
Transcriptome id Sobic.004G358700.8,Sobic.004G358700.7,Sobic.004G358700.3,Sobic.004G358700.6,Sobic.004G358700.4,Sobic.004G358700.5
Synonym ATPUB44, Sb04g038540, PUB44, SAUL1
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt C5XWT4
Pfam PF00514 PF04564
Panther DB PTHR22849 PTHR22849:SF31
NCBI CDD KOG4224; Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G20780 : senescence-associated E3 ubiquitin ligase 1
RAP-DB (Rice) LOC_Os03g45420.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a032696
Brachypodium KQK02180
Barley HORVU6Hr1G095130.1
Wheat TraesCS6B02G469900 , TraesCS6D02G407400 , TraesCS6D02G407400 , TraesCS6A02G419200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G178901 - -
2 Sobic.002G005300 dirigent, putative, expressed -
3 Sobic.002G209300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.007G052600 expressed protein -
5 Sobic.010G241500 phytosulfokine receptor precursor, putative, expressed -
6 Sobic.009G206800 WRKY23, expressed -
7 Sobic.010G155500 glycosyl hydrolases family 17, putative, expressed -
8 Sobic.010G099400 metalloendoproteinase 1 precursor, putative, expressed -
9 Sobic.009G123000 expressed protein -
10 Sobic.001G008400 brevis radix, putative, expressed -
11 Sobic.008G061000 expressed protein -
12 Sobic.008G088860 - -
13 Sobic.001G416900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
14 Sobic.004G329100 gibberellin 2-beta-dioxygenase 7, putative, expressed -
15 Sobic.002G041533 - -
16 Sobic.003G127600 ubiquitin-conjugating enzyme, putative, expressed K06688: UBE2C, ubiquitin-conjugating enzyme E2 C
17 Sobic.002G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
18 Sobic.002G074400 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
19 Sobic.001G406901 - -
20 Sobic.001G193400 DUF538 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G358700 Sobic004G358700 Sobic008G178901 Sobic008G178901 Sobic004G358700--Sobic008G178901 Sobic002G005300 Sobic002G005300 Sobic004G358700--Sobic002G005300 Sobic002G209300 Sobic002G209300 Sobic004G358700--Sobic002G209300 Sobic007G052600 Sobic007G052600 Sobic004G358700--Sobic007G052600 Sobic010G241500 Sobic010G241500 Sobic004G358700--Sobic010G241500 Sobic009G206800 Sobic009G206800 Sobic004G358700--Sobic009G206800 Sobic010G155500 Sobic010G155500 Sobic004G358700--Sobic010G155500 Sobic010G099400 Sobic010G099400 Sobic004G358700--Sobic010G099400 Sobic009G123000 Sobic009G123000 Sobic004G358700--Sobic009G123000 Sobic008G178901--Sobic010G155500 Sobic008G178901--Sobic007G052600 Sobic008G178901--Sobic002G005300 Sobic008G178901--Sobic009G206800 Sobic004G329100 Sobic004G329100 Sobic008G178901--Sobic004G329100 Sobic008G061000 Sobic008G061000 Sobic008G178901--Sobic008G061000 Sobic010G014200 Sobic010G014200 Sobic008G178901--Sobic010G014200 Sobic001G008400 Sobic001G008400 Sobic008G178901--Sobic001G008400 Sobic006G197000 Sobic006G197000 Sobic008G178901--Sobic006G197000 Sobic002G005300--Sobic008G178901 Sobic002G005300--Sobic007G052600 Sobic002G005300--Sobic009G206800 Sobic002G005300--Sobic001G008400 Sobic002G005300--Sobic004G358700 Sobic002G005300--Sobic008G061000 Sobic008G088860 Sobic008G088860 Sobic002G005300--Sobic008G088860 Sobic002G005300--Sobic009G123000 Sobic006G009900 Sobic006G009900 Sobic002G005300--Sobic006G009900 Sobic001G158000 Sobic001G158000 Sobic002G209300--Sobic001G158000 Sobic002G403400 Sobic002G403400 Sobic002G209300--Sobic002G403400 Sobic001G193400 Sobic001G193400 Sobic002G209300--Sobic001G193400 Sobic002G059200 Sobic002G059200 Sobic002G209300--Sobic002G059200 Sobic004G265400 Sobic004G265400 Sobic002G209300--Sobic004G265400 Sobic003G350100 Sobic003G350100 Sobic002G209300--Sobic003G350100 Sobic007G221800 Sobic007G221800 Sobic002G209300--Sobic007G221800 Sobic004G230900 Sobic004G230900 Sobic002G209300--Sobic004G230900 Sobic007G149600 Sobic007G149600 Sobic002G209300--Sobic007G149600 Sobic007G052600--Sobic008G061000 Sobic007G052600--Sobic010G155500 Sobic007G052600--Sobic008G178901 Sobic007G052600--Sobic006G197000 Sobic007G052600--Sobic009G206800 Sobic004G128600 Sobic004G128600 Sobic007G052600--Sobic004G128600 Sobic007G052600--Sobic004G329100 Sobic007G052600--Sobic001G193400 Sobic001G200500 Sobic001G200500 Sobic007G052600--Sobic001G200500 Sobic010G241500--Sobic010G099400 Sobic010G241500--Sobic002G209300 Sobic007G224800 Sobic007G224800 Sobic010G241500--Sobic007G224800 Sobic010G036200 Sobic010G036200 Sobic010G241500--Sobic010G036200 Sobic001G406901 Sobic001G406901 Sobic010G241500--Sobic001G406901 Sobic010G241500--Sobic004G358700 Sobic010G158100 Sobic010G158100 Sobic010G241500--Sobic010G158100 Sobic002G326050 Sobic002G326050 Sobic010G241500--Sobic002G326050 Sobic010G241500--Sobic001G158000 Sobic009G206800--Sobic007G052600 Sobic009G206800--Sobic006G009900 Sobic009G206800--Sobic002G005300 Sobic009G206800--Sobic008G178901 Sobic009G206800--Sobic006G197000 Sobic009G206800--Sobic008G061000 Sobic009G206800--Sobic001G008400 Sobic010G161300 Sobic010G161300 Sobic009G206800--Sobic010G161300 Sobic009G206800--Sobic009G123000 Sobic010G155500--Sobic008G178901 Sobic010G155500--Sobic007G052600 Sobic003G101600 Sobic003G101600 Sobic010G155500--Sobic003G101600 Sobic008G015000 Sobic008G015000 Sobic010G155500--Sobic008G015000 Sobic006G094400 Sobic006G094400 Sobic010G155500--Sobic006G094400 Sobic009G094000 Sobic009G094000 Sobic010G155500--Sobic009G094000 Sobic008G164525 Sobic008G164525 Sobic010G155500--Sobic008G164525 Sobic003G217000 Sobic003G217000 Sobic010G155500--Sobic003G217000 Sobic001G434450 Sobic001G434450 Sobic010G155500--Sobic001G434450 Sobic010G099400--Sobic002G209300 Sobic010G099400--Sobic001G158000 Sobic010G099400--Sobic002G326050 Sobic010G099400--Sobic010G158100 Sobic002G140100 Sobic002G140100 Sobic010G099400--Sobic002G140100 Sobic010G099400--Sobic007G221800 Sobic010G158766 Sobic010G158766 Sobic010G099400--Sobic010G158766 Sobic010G099400--Sobic004G265400 Sobic006G259201 Sobic006G259201 Sobic010G099400--Sobic006G259201 Sobic003G127600 Sobic003G127600 Sobic009G123000--Sobic003G127600 Sobic001G416800 Sobic001G416800 Sobic009G123000--Sobic001G416800 Sobic005G198300 Sobic005G198300 Sobic009G123000--Sobic005G198300 Sobic006G003000 Sobic006G003000 Sobic009G123000--Sobic006G003000 Sobic001G416900 Sobic001G416900 Sobic009G123000--Sobic001G416900 Sobic001G148600 Sobic001G148600 Sobic009G123000--Sobic001G148600 Sobic009G123000--Sobic008G061000 Sobic009G155500 Sobic009G155500 Sobic009G123000--Sobic009G155500 Sobic009G123000--Sobic010G161300
Octagon: transcription factors


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