Gene annotation
Transcriptome id Sobic.003G310600.2,Sobic.003G310600.1
Synonym Sb03g035870
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
mitochondrial glycoprotein, putative, expressed
UniProt A0A1B6Q6B4 , C5XLI9
Pfam PF02330
Panther DB PTHR31365 PTHR31365:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005759; mitochondrial matrix


Orthologs (automatic annotation)
TAIR AT4G32605 : Mitochondrial glycoprotein family protein
RAP-DB (Rice) LOC_Os01g56460.1 : mitochondrial glycoprotein, putative, expressed
MaizeGDB (Corn) Zm00025a027395
Brachypodium KQK09961
Barley HORVU3Hr1G075200.1 , HORVU3Hr1G075180.1
Wheat TraesCS3A02G296200 , TraesCS3D02G306700 , TraesCS3D02G306700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
2 Sobic.003G244300 C2 domain containing protein, putative, expressed -
3 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
4 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
5 Sobic.001G018200 prohibitin-2, putative, expressed K17081: prohibitin 2
6 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
7 Sobic.008G113700 auxin-binding protein 4 precursor, putative, expressed -
8 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
9 Sobic.005G164700 h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed K11128: GAR1, H/ACA ribonucleoprotein complex subunit 1
10 Sobic.008G094600 - -
11 Sobic.002G282200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2
13 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
14 Sobic.004G082700 PPR repeat containing protein, expressed -
15 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
16 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
17 Sobic.001G397000 argininosuccinate lyase, putative, expressed K01755: argH, argininosuccinate lyase
18 Sobic.002G045100 LSM domain containing protein, expressed K11086: SNRPB, small nuclear ribonucleoprotein B and B'
19 Sobic.001G214900 expressed protein -
20 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e


Gene co-expression network
sample Sobic003G310600 Sobic003G310600 Sobic001G081400 Sobic001G081400 Sobic003G310600--Sobic001G081400 Sobic003G244300 Sobic003G244300 Sobic003G310600--Sobic003G244300 Sobic001G371100 Sobic001G371100 Sobic003G310600--Sobic001G371100 Sobic004G047500 Sobic004G047500 Sobic003G310600--Sobic004G047500 Sobic001G018200 Sobic001G018200 Sobic003G310600--Sobic001G018200 Sobic006G108600 Sobic006G108600 Sobic003G310600--Sobic006G108600 Sobic008G113700 Sobic008G113700 Sobic003G310600--Sobic008G113700 Sobic001G107300 Sobic001G107300 Sobic003G310600--Sobic001G107300 Sobic005G164700 Sobic005G164700 Sobic003G310600--Sobic005G164700 Sobic007G034400 Sobic007G034400 Sobic001G081400--Sobic007G034400 Sobic001G081400--Sobic003G310600 Sobic002G353500 Sobic002G353500 Sobic001G081400--Sobic002G353500 Sobic008G094600 Sobic008G094600 Sobic001G081400--Sobic008G094600 Sobic001G069400 Sobic001G069400 Sobic001G081400--Sobic001G069400 Sobic001G202400 Sobic001G202400 Sobic001G081400--Sobic001G202400 Sobic001G081400--Sobic003G244300 Sobic003G015400 Sobic003G015400 Sobic001G081400--Sobic003G015400 Sobic008G103900 Sobic008G103900 Sobic001G081400--Sobic008G103900 Sobic004G325200 Sobic004G325200 Sobic003G244300--Sobic004G325200 Sobic003G244300--Sobic008G094600 Sobic004G247200 Sobic004G247200 Sobic003G244300--Sobic004G247200 Sobic008G100000 Sobic008G100000 Sobic003G244300--Sobic008G100000 Sobic008G098800 Sobic008G098800 Sobic003G244300--Sobic008G098800 Sobic010G230700 Sobic010G230700 Sobic003G244300--Sobic010G230700 Sobic002G372400 Sobic002G372400 Sobic003G244300--Sobic002G372400 Sobic006G201500 Sobic006G201500 Sobic003G244300--Sobic006G201500 Sobic005G019700 Sobic005G019700 Sobic003G244300--Sobic005G019700 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic006G251600 Sobic006G251600 Sobic001G371100--Sobic006G251600 Sobic004G047200 Sobic004G047200 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic004G047500--Sobic001G107300 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic002G406500 Sobic002G406500 Sobic001G018200--Sobic002G406500 Sobic006G216600 Sobic006G216600 Sobic001G018200--Sobic006G216600 Sobic001G058900 Sobic001G058900 Sobic001G018200--Sobic001G058900 Sobic001G057300 Sobic001G057300 Sobic001G018200--Sobic001G057300 Sobic002G304900 Sobic002G304900 Sobic001G018200--Sobic002G304900 Sobic010G038700 Sobic010G038700 Sobic001G018200--Sobic010G038700 Sobic001G513500 Sobic001G513500 Sobic001G018200--Sobic001G513500 Sobic009G191200 Sobic009G191200 Sobic001G018200--Sobic009G191200 Sobic001G377800 Sobic001G377800 Sobic001G018200--Sobic001G377800 Sobic007G029400 Sobic007G029400 Sobic006G108600--Sobic007G029400 Sobic010G054200 Sobic010G054200 Sobic006G108600--Sobic010G054200 Sobic008G135000 Sobic008G135000 Sobic006G108600--Sobic008G135000 Sobic010G005300 Sobic010G005300 Sobic006G108600--Sobic010G005300 Sobic010G076400 Sobic010G076400 Sobic006G108600--Sobic010G076400 Sobic006G108600--Sobic008G094600 Sobic001G162800 Sobic001G162800 Sobic006G108600--Sobic001G162800 Sobic009G233400 Sobic009G233400 Sobic006G108600--Sobic009G233400 Sobic004G032000 Sobic004G032000 Sobic006G108600--Sobic004G032000 Sobic008G113700--Sobic003G310600 Sobic007G092200 Sobic007G092200 Sobic008G113700--Sobic007G092200 Sobic002G282200 Sobic002G282200 Sobic008G113700--Sobic002G282200 Sobic008G113700--Sobic004G047500 Sobic009G071700 Sobic009G071700 Sobic008G113700--Sobic009G071700 Sobic007G137350 Sobic007G137350 Sobic008G113700--Sobic007G137350 Sobic008G113700--Sobic001G081900 Sobic001G436300 Sobic001G436300 Sobic008G113700--Sobic001G436300 Sobic008G113700--Sobic002G353500 Sobic004G343600 Sobic004G343600 Sobic001G107300--Sobic004G343600 Sobic001G505000 Sobic001G505000 Sobic001G107300--Sobic001G505000 Sobic001G107300--Sobic004G047500 Sobic001G107300--Sobic002G353500 Sobic006G013900 Sobic006G013900 Sobic001G107300--Sobic006G013900 Sobic003G109200 Sobic003G109200 Sobic001G107300--Sobic003G109200 Sobic001G440900 Sobic001G440900 Sobic001G107300--Sobic001G440900 Sobic001G107300--Sobic001G162800 Sobic001G107300--Sobic001G436300 Sobic005G164700--Sobic007G034400 Sobic002G115000 Sobic002G115000 Sobic005G164700--Sobic002G115000 Sobic005G164700--Sobic006G201500 Sobic002G045100 Sobic002G045100 Sobic005G164700--Sobic002G045100 Sobic005G164700--Sobic008G135000 Sobic001G085400 Sobic001G085400 Sobic005G164700--Sobic001G085400 Sobic008G021100 Sobic008G021100 Sobic005G164700--Sobic008G021100 Sobic005G164700--Sobic001G058900 Sobic006G156000 Sobic006G156000 Sobic005G164700--Sobic006G156000
Octagon: transcription factors


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