Gene annotation
Transcriptome id Sobic.002G282200.1
Synonym Sb02g031520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
pentatricopeptide, putative, expressed
UniProt C5X6Y3
Pfam PF01535 PF13812 PF13041
Panther DB PTHR24015 PTHR24015:SF408
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20300 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os09g37070.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a014479
Brachypodium -
Barley HORVU5Hr1G084690.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G282200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G088900 AGAP007117-PA, putative, expressed -
2 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
3 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
4 Sobic.003G310600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed -
5 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
6 Sobic.008G113700 auxin-binding protein 4 precursor, putative, expressed -
7 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
8 Sobic.004G082700 PPR repeat containing protein, expressed -
9 Sobic.003G436600 expressed protein -
10 Sobic.005G079201 - -
11 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
12 Sobic.002G133000 delta14-sterol reductase, putative, expressed K00222: TM7SF2, Delta14-sterol reductase
13 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
14 Sobic.008G100700 SSXT protein, putative, expressed -
15 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
16 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
17 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
18 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
19 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
20 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4


Gene co-expression network
sample Sobic002G282200 Sobic002G282200 Sobic005G088900 Sobic005G088900 Sobic002G282200--Sobic005G088900 Sobic001G235700 Sobic001G235700 Sobic002G282200--Sobic001G235700 Sobic009G191500 Sobic009G191500 Sobic002G282200--Sobic009G191500 Sobic003G310600 Sobic003G310600 Sobic002G282200--Sobic003G310600 Sobic007G092200 Sobic007G092200 Sobic002G282200--Sobic007G092200 Sobic008G113700 Sobic008G113700 Sobic002G282200--Sobic008G113700 Sobic003G336500 Sobic003G336500 Sobic002G282200--Sobic003G336500 Sobic004G082700 Sobic004G082700 Sobic002G282200--Sobic004G082700 Sobic003G436600 Sobic003G436600 Sobic002G282200--Sobic003G436600 Sobic001G199500 Sobic001G199500 Sobic005G088900--Sobic001G199500 Sobic005G088900--Sobic009G191500 Sobic009G176300 Sobic009G176300 Sobic005G088900--Sobic009G176300 Sobic004G215900 Sobic004G215900 Sobic005G088900--Sobic004G215900 Sobic008G068100 Sobic008G068100 Sobic005G088900--Sobic008G068100 Sobic003G432300 Sobic003G432300 Sobic005G088900--Sobic003G432300 Sobic003G144000 Sobic003G144000 Sobic005G088900--Sobic003G144000 Sobic002G133000 Sobic002G133000 Sobic005G088900--Sobic002G133000 Sobic002G003300 Sobic002G003300 Sobic005G088900--Sobic002G003300 Sobic001G097400 Sobic001G097400 Sobic001G235700--Sobic001G097400 Sobic001G436300 Sobic001G436300 Sobic001G235700--Sobic001G436300 Sobic004G208100 Sobic004G208100 Sobic001G235700--Sobic004G208100 Sobic004G190600 Sobic004G190600 Sobic001G235700--Sobic004G190600 Sobic001G440900 Sobic001G440900 Sobic001G235700--Sobic001G440900 Sobic002G303800 Sobic002G303800 Sobic001G235700--Sobic002G303800 Sobic001G235700--Sobic002G133000 Sobic004G343600 Sobic004G343600 Sobic001G235700--Sobic004G343600 Sobic006G127500 Sobic006G127500 Sobic001G235700--Sobic006G127500 Sobic009G191500--Sobic008G068100 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic001G081400 Sobic001G081400 Sobic003G310600--Sobic001G081400 Sobic003G244300 Sobic003G244300 Sobic003G310600--Sobic003G244300 Sobic001G371100 Sobic001G371100 Sobic003G310600--Sobic001G371100 Sobic004G047500 Sobic004G047500 Sobic003G310600--Sobic004G047500 Sobic001G018200 Sobic001G018200 Sobic003G310600--Sobic001G018200 Sobic006G108600 Sobic006G108600 Sobic003G310600--Sobic006G108600 Sobic003G310600--Sobic008G113700 Sobic001G107300 Sobic001G107300 Sobic003G310600--Sobic001G107300 Sobic005G164700 Sobic005G164700 Sobic003G310600--Sobic005G164700 Sobic009G071700 Sobic009G071700 Sobic007G092200--Sobic009G071700 Sobic007G092200--Sobic009G191500 Sobic006G225400 Sobic006G225400 Sobic007G092200--Sobic006G225400 Sobic007G092200--Sobic003G336500 Sobic007G137350 Sobic007G137350 Sobic007G092200--Sobic007G137350 Sobic001G457200 Sobic001G457200 Sobic007G092200--Sobic001G457200 Sobic007G092200--Sobic005G088900 Sobic007G092200--Sobic005G079201 Sobic001G372800 Sobic001G372800 Sobic007G092200--Sobic001G372800 Sobic008G113700--Sobic003G310600 Sobic008G113700--Sobic007G092200 Sobic008G113700--Sobic002G282200 Sobic008G113700--Sobic004G047500 Sobic008G113700--Sobic009G071700 Sobic008G113700--Sobic007G137350 Sobic001G081900 Sobic001G081900 Sobic008G113700--Sobic001G081900 Sobic008G113700--Sobic001G436300 Sobic002G353500 Sobic002G353500 Sobic008G113700--Sobic002G353500 Sobic003G336500--Sobic008G068100 Sobic001G040600 Sobic001G040600 Sobic003G336500--Sobic001G040600 Sobic003G336500--Sobic009G191500 Sobic003G336500--Sobic007G060600 Sobic003G336500--Sobic001G199500 Sobic003G336500--Sobic001G483800 Sobic003G336500--Sobic005G088900 Sobic003G336500--Sobic009G176300 Sobic008G100400 Sobic008G100400 Sobic003G336500--Sobic008G100400 Sobic008G100700 Sobic008G100700 Sobic004G082700--Sobic008G100700 Sobic001G167500 Sobic001G167500 Sobic004G082700--Sobic001G167500 Sobic010G134100 Sobic010G134100 Sobic004G082700--Sobic010G134100 Sobic004G082700--Sobic003G144000 Sobic004G082700--Sobic001G371100 Sobic002G268100 Sobic002G268100 Sobic004G082700--Sobic002G268100 Sobic005G098000 Sobic005G098000 Sobic004G082700--Sobic005G098000 Sobic001G008500 Sobic001G008500 Sobic004G082700--Sobic001G008500 Sobic001G493400 Sobic001G493400 Sobic004G082700--Sobic001G493400 Sobic009G163600 Sobic009G163600 Sobic003G436600--Sobic009G163600 Sobic003G425100 Sobic003G425100 Sobic003G436600--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic003G436600--Sobic002G177500 Sobic004G027400 Sobic004G027400 Sobic003G436600--Sobic004G027400 Sobic007G059700 Sobic007G059700 Sobic003G436600--Sobic007G059700 Sobic001G368300 Sobic001G368300 Sobic003G436600--Sobic001G368300 Sobic003G436600--Sobic005G088900 Sobic003G361400 Sobic003G361400 Sobic003G436600--Sobic003G361400 Sobic001G453500 Sobic001G453500 Sobic003G436600--Sobic001G453500
Octagon: transcription factors


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