Gene annotation
Transcriptome id Sobic.008G113700.1
Synonym Sb08g016760, ABP1, ABP
Functional annotation auxin-binding protein 4 precursor, putative, expressed
UniProt C5YP89
Pfam PF07883
Panther DB PTHR37236:SF1 PTHR37236
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02980 : endoplasmic reticulum auxin binding protein 1
RAP-DB (Rice) LOC_Os12g34460.2 : auxin-binding protein 4 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a057843 , Zm00025a025559 , Zm00025a054393 , Zm00025a054395
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G113700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G310600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial glycoprotein, putative, expressed -
2 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
3 Sobic.002G282200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.004G047500 down-regulated TF in developmental senescence(PubMedID : 27586543)@whirly transcription factor domain containing protein, expressed -
5 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.007G137350 - K14549: U3 small nucleolar RNA-associated protein 15
7 Sobic.001G081900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@semialdehyde dehydrogenase, NAD binding domain containing protein, putative, expressed K00133: aspartate-semialdehyde dehydrogenase
8 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
9 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
10 Sobic.001G116800 zinc finger family protein, putative, expressed -
11 Sobic.008G100700 SSXT protein, putative, expressed -
12 Sobic.003G436600 expressed protein -
13 Sobic.003G211100 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
14 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase
15 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
16 Sobic.001G235700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@translin, putative, expressed -
17 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
18 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
19 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
20 Sobic.004G208100 expressed protein -


Gene co-expression network
sample Sobic008G113700 Sobic008G113700 Sobic003G310600 Sobic003G310600 Sobic008G113700--Sobic003G310600 Sobic007G092200 Sobic007G092200 Sobic008G113700--Sobic007G092200 Sobic002G282200 Sobic002G282200 Sobic008G113700--Sobic002G282200 Sobic004G047500 Sobic004G047500 Sobic008G113700--Sobic004G047500 Sobic009G071700 Sobic009G071700 Sobic008G113700--Sobic009G071700 Sobic007G137350 Sobic007G137350 Sobic008G113700--Sobic007G137350 Sobic001G081900 Sobic001G081900 Sobic008G113700--Sobic001G081900 Sobic001G436300 Sobic001G436300 Sobic008G113700--Sobic001G436300 Sobic002G353500 Sobic002G353500 Sobic008G113700--Sobic002G353500 Sobic001G081400 Sobic001G081400 Sobic003G310600--Sobic001G081400 Sobic003G244300 Sobic003G244300 Sobic003G310600--Sobic003G244300 Sobic001G371100 Sobic001G371100 Sobic003G310600--Sobic001G371100 Sobic003G310600--Sobic004G047500 Sobic001G018200 Sobic001G018200 Sobic003G310600--Sobic001G018200 Sobic006G108600 Sobic006G108600 Sobic003G310600--Sobic006G108600 Sobic003G310600--Sobic008G113700 Sobic001G107300 Sobic001G107300 Sobic003G310600--Sobic001G107300 Sobic005G164700 Sobic005G164700 Sobic003G310600--Sobic005G164700 Sobic007G092200--Sobic009G071700 Sobic009G191500 Sobic009G191500 Sobic007G092200--Sobic009G191500 Sobic006G225400 Sobic006G225400 Sobic007G092200--Sobic006G225400 Sobic003G336500 Sobic003G336500 Sobic007G092200--Sobic003G336500 Sobic007G092200--Sobic007G137350 Sobic001G457200 Sobic001G457200 Sobic007G092200--Sobic001G457200 Sobic005G088900 Sobic005G088900 Sobic007G092200--Sobic005G088900 Sobic005G079201 Sobic005G079201 Sobic007G092200--Sobic005G079201 Sobic001G372800 Sobic001G372800 Sobic007G092200--Sobic001G372800 Sobic002G282200--Sobic005G088900 Sobic001G235700 Sobic001G235700 Sobic002G282200--Sobic001G235700 Sobic002G282200--Sobic009G191500 Sobic002G282200--Sobic003G310600 Sobic002G282200--Sobic007G092200 Sobic002G282200--Sobic008G113700 Sobic002G282200--Sobic003G336500 Sobic004G082700 Sobic004G082700 Sobic002G282200--Sobic004G082700 Sobic003G436600 Sobic003G436600 Sobic002G282200--Sobic003G436600 Sobic004G047500--Sobic001G107300 Sobic004G047500--Sobic001G371100 Sobic002G133000 Sobic002G133000 Sobic004G047500--Sobic002G133000 Sobic002G303800 Sobic002G303800 Sobic004G047500--Sobic002G303800 Sobic002G135100 Sobic002G135100 Sobic004G047500--Sobic002G135100 Sobic004G208100 Sobic004G208100 Sobic004G047500--Sobic004G208100 Sobic004G336600 Sobic004G336600 Sobic004G047500--Sobic004G336600 Sobic002G267600 Sobic002G267600 Sobic004G047500--Sobic002G267600 Sobic001G061800 Sobic001G061800 Sobic004G047500--Sobic001G061800 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic004G173100 Sobic004G173100 Sobic009G071700--Sobic004G173100 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic009G071700--Sobic007G092200 Sobic007G137350--Sobic009G071700 Sobic007G137350--Sobic004G173100 Sobic007G137350--Sobic007G092200 Sobic007G137350--Sobic005G100900 Sobic009G228500 Sobic009G228500 Sobic007G137350--Sobic009G228500 Sobic007G137350--Sobic004G082700 Sobic007G137350--Sobic006G251600 Sobic001G157300 Sobic001G157300 Sobic007G137350--Sobic001G157300 Sobic007G137350--Sobic006G198600 Sobic001G081900--Sobic001G371100 Sobic001G397000 Sobic001G397000 Sobic001G081900--Sobic001G397000 Sobic010G125100 Sobic010G125100 Sobic001G081900--Sobic010G125100 Sobic007G079600 Sobic007G079600 Sobic001G081900--Sobic007G079600 Sobic010G144900 Sobic010G144900 Sobic001G081900--Sobic010G144900 Sobic002G101000 Sobic002G101000 Sobic001G081900--Sobic002G101000 Sobic002G304400 Sobic002G304400 Sobic001G081900--Sobic002G304400 Sobic007G171200 Sobic007G171200 Sobic001G081900--Sobic007G171200 Sobic010G032700 Sobic010G032700 Sobic001G081900--Sobic010G032700 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G436300--Sobic001G235700 Sobic001G115500 Sobic001G115500 Sobic001G436300--Sobic001G115500 Sobic003G274400 Sobic003G274400 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic006G245700 Sobic006G245700 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic002G353500--Sobic001G107300 Sobic001G040300 Sobic001G040300 Sobic002G353500--Sobic001G040300 Sobic002G353500--Sobic001G081400 Sobic007G022500 Sobic007G022500 Sobic002G353500--Sobic007G022500 Sobic002G353500--Sobic006G108600 Sobic001G349400 Sobic001G349400 Sobic002G353500--Sobic001G349400 Sobic001G544100 Sobic001G544100 Sobic002G353500--Sobic001G544100 Sobic002G353500--Sobic004G343600 Sobic009G052500 Sobic009G052500 Sobic002G353500--Sobic009G052500
Octagon: transcription factors


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