Gene annotation
Transcriptome id Sobic.002G112100.1
Synonym STRS1, Sb02g009590
Functional annotation -
UniProt C5X497
Pfam PF00271 PF00270
Panther DB PTHR24031 PTHR24031:SF320
NCBI CDD -
KEGG Orthology K14811; ATP-dependent RNA helicase DBP3
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G31970 : DEA(D/H)-box RNA helicase family protein
RAP-DB (Rice) LOC_Os07g20580.1 : DEAD-box ATP-dependent RNA helicase, putative, expressed
MaizeGDB (Corn) Zm00025a045698
Brachypodium KQK20136
Barley HORVU5Hr1G037290.1 , HORVU5Hr1G037290.2 , HORVU5Hr1G037290.3
Wheat TraesCS5A02G114400 , TraesCS5D02G125100 , TraesCS5B02G120500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G256000 NOL1/NOP2/sun family protein, putative, expressed K14835: 25S rRNA (cytosine2870-C5)-methyltransferase
2 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.002G234300 NOL1/NOP2/sun family protein, putative, expressed K15334: NCL1, multisite-specific tRNA:(cytosine-C5)-methyltransferase
4 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
5 Sobic.010G003400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
6 Sobic.001G052400 RNA recognition motif containing protein, putative, expressed K14573: NOP4, nucleolar protein 4
7 Sobic.001G251100 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
8 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
9 Sobic.001G453400 CCAAT/enhancer-binding protein, putative, expressed K14832: MAK21, NOC1, ribosome biogenesis protein MAK21
10 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
11 Sobic.010G102600 pentatricopeptide, putative, expressed -
12 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
13 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
14 Sobic.008G051200 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
15 Sobic.010G142700 - -
16 Sobic.002G171300 - -
17 Sobic.009G016400 RNA recognition motif containing protein, expressed -
18 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
19 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
20 Sobic.001G335300 NOC3 - Putative nucleolar complex subunit 3, expressed K14834: nucleolar complex protein 3


Gene co-expression network
sample Sobic002G112100 Sobic002G112100 Sobic004G256000 Sobic004G256000 Sobic002G112100--Sobic004G256000 Sobic008G160000 Sobic008G160000 Sobic002G112100--Sobic008G160000 Sobic002G234300 Sobic002G234300 Sobic002G112100--Sobic002G234300 Sobic009G246500 Sobic009G246500 Sobic002G112100--Sobic009G246500 Sobic010G003400 Sobic010G003400 Sobic002G112100--Sobic010G003400 Sobic001G052400 Sobic001G052400 Sobic002G112100--Sobic001G052400 Sobic001G251100 Sobic001G251100 Sobic002G112100--Sobic001G251100 Sobic006G086600 Sobic006G086600 Sobic002G112100--Sobic006G086600 Sobic001G453400 Sobic001G453400 Sobic002G112100--Sobic001G453400 Sobic004G256000--Sobic002G234300 Sobic004G256000--Sobic002G112100 Sobic004G256000--Sobic009G246500 Sobic002G071400 Sobic002G071400 Sobic004G256000--Sobic002G071400 Sobic009G249800 Sobic009G249800 Sobic004G256000--Sobic009G249800 Sobic006G269900 Sobic006G269900 Sobic004G256000--Sobic006G269900 Sobic008G169200 Sobic008G169200 Sobic004G256000--Sobic008G169200 Sobic008G049100 Sobic008G049100 Sobic004G256000--Sobic008G049100 Sobic004G256000--Sobic008G160000 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600 Sobic002G234300--Sobic002G071400 Sobic002G234300--Sobic004G256000 Sobic002G234300--Sobic008G049100 Sobic001G110600 Sobic001G110600 Sobic002G234300--Sobic001G110600 Sobic009G217200 Sobic009G217200 Sobic002G234300--Sobic009G217200 Sobic002G234300--Sobic001G453400 Sobic002G234300--Sobic010G003400 Sobic002G234300--Sobic009G246500 Sobic003G199300 Sobic003G199300 Sobic002G234300--Sobic003G199300 Sobic009G246500--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic009G246500--Sobic004G224600 Sobic009G101200 Sobic009G101200 Sobic009G246500--Sobic009G101200 Sobic010G003400--Sobic006G086600 Sobic010G003400--Sobic001G453400 Sobic010G003400--Sobic001G052400 Sobic010G003400--Sobic009G101200 Sobic003G260400 Sobic003G260400 Sobic010G003400--Sobic003G260400 Sobic001G004400 Sobic001G004400 Sobic010G003400--Sobic001G004400 Sobic004G320500 Sobic004G320500 Sobic010G003400--Sobic004G320500 Sobic001G089600 Sobic001G089600 Sobic010G003400--Sobic001G089600 Sobic004G030800 Sobic004G030800 Sobic010G003400--Sobic004G030800 Sobic001G052400--Sobic004G320500 Sobic001G052400--Sobic010G003400 Sobic001G052400--Sobic001G453400 Sobic007G217100 Sobic007G217100 Sobic001G052400--Sobic007G217100 Sobic003G042400 Sobic003G042400 Sobic001G052400--Sobic003G042400 Sobic001G052400--Sobic004G340400 Sobic001G052400--Sobic006G086600 Sobic010G174700 Sobic010G174700 Sobic001G052400--Sobic010G174700 Sobic006G125900 Sobic006G125900 Sobic001G052400--Sobic006G125900 Sobic003G104000 Sobic003G104000 Sobic001G251100--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic001G251100--Sobic002G256700 Sobic004G131300 Sobic004G131300 Sobic001G251100--Sobic004G131300 Sobic002G133300 Sobic002G133300 Sobic001G251100--Sobic002G133300 Sobic003G293300 Sobic003G293300 Sobic001G251100--Sobic003G293300 Sobic007G054800 Sobic007G054800 Sobic001G251100--Sobic007G054800 Sobic001G493700 Sobic001G493700 Sobic001G251100--Sobic001G493700 Sobic004G257100 Sobic004G257100 Sobic001G251100--Sobic004G257100 Sobic003G379200 Sobic003G379200 Sobic001G251100--Sobic003G379200 Sobic006G086600--Sobic010G003400 Sobic006G086600--Sobic001G145400 Sobic006G086600--Sobic001G089600 Sobic006G086600--Sobic009G101200 Sobic006G086600--Sobic001G453400 Sobic006G086600--Sobic004G320500 Sobic002G235200 Sobic002G235200 Sobic006G086600--Sobic002G235200 Sobic007G220300 Sobic007G220300 Sobic006G086600--Sobic007G220300 Sobic010G007100 Sobic010G007100 Sobic006G086600--Sobic010G007100 Sobic001G453400--Sobic010G003400 Sobic001G453400--Sobic006G086600 Sobic001G376900 Sobic001G376900 Sobic001G453400--Sobic001G376900 Sobic003G156500 Sobic003G156500 Sobic001G453400--Sobic003G156500 Sobic001G453400--Sobic001G052400 Sobic001G453400--Sobic001G089600 Sobic001G453400--Sobic006G125900 Sobic007G106700 Sobic007G106700 Sobic001G453400--Sobic007G106700 Sobic010G114900 Sobic010G114900 Sobic001G453400--Sobic010G114900
Octagon: transcription factors


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