Gene annotation
Transcriptome id Sobic.008G132000.1
Synonym Sb08g018420, RPM1, RPS3
Functional annotation RGH1A, putative, expressed
UniProt C5YPV6
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF544
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os12g37770.1 : RGH1A, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK02772
Barley HORVU3Hr1G107310.2 , HORVU3Hr1G107310.1 , HORVU5Hr1G058640.1 , HORVU3Hr1G099740.16 , HORVU3Hr1G099740.17 , HORVU3Hr1G099740.15 , HORVU3Hr1G099740.12 , HORVU3Hr1G099740.13 , HORVU3Hr1G099740.10 , HORVU3Hr1G099740.8 , HORVU3Hr1G099740.9 , HORVU3Hr1G099740.4 , HORVU3Hr1G099740.5 , HORVU3Hr1G099740.6 , HORVU3Hr1G099740.7 , HORVU3Hr1G099740.1 , HORVU3Hr1G099740.2 , HORVU3Hr1G099740.3
Wheat TraesCS3D02G485300 , TraesCS3D02G485300 , TraesCS5D02G098500 , TraesCS3B02G541100 , TraesCS5B02G093500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G191900 transporter family protein, putative, expressed -
2 Sobic.009G142000 plus-3 domain containing protein, putative, expressed -
3 Sobic.003G294600 Homeobox domain containing protein, expressed -
4 Sobic.006G280200 PHD finger family protein, putative, expressed -
5 Sobic.001G291000 disease resistance protein RPM1, putative, expressed K13457: RPM1, disease resistance protein RPM1
6 Sobic.001G453000 no apical meristem protein, putative, expressed -
7 Sobic.003G445500 "domain confirmed by Pfam database, expressed in leaf, flower, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
8 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
9 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
10 Sobic.008G002500 RCD1, putative, expressed -
11 Sobic.004G355800 expressed protein -
12 Sobic.007G029200 myosin heavy chain-related, putative, expressed -
13 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
14 Sobic.010G001100 chromo domain containing protein, expressed -
15 Sobic.007G019300 adaptin, putative, expressed K12397: AP-3 complex subunit beta
16 Sobic.005G200900 SCC3, putative, expressed K06671: STAG1_2, SCC3, cohesin complex subunit SA-1/2
17 Sobic.001G016600 FAR1 family protein, expressed -
18 Sobic.003G312100 guanine nucleotide exchange family protein, putative, expressed -
19 Sobic.002G309200 FAR1 family protein, expressed -
20 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8


Gene co-expression network
sample Sobic008G132000 Sobic008G132000 Sobic005G191900 Sobic005G191900 Sobic008G132000--Sobic005G191900 Sobic009G142000 Sobic009G142000 Sobic008G132000--Sobic009G142000 Sobic003G294600 Sobic003G294600 Sobic008G132000--Sobic003G294600 Sobic006G280200 Sobic006G280200 Sobic008G132000--Sobic006G280200 Sobic001G291000 Sobic001G291000 Sobic008G132000--Sobic001G291000 Sobic001G453000 Sobic001G453000 Sobic008G132000--Sobic001G453000 Sobic003G445500 Sobic003G445500 Sobic008G132000--Sobic003G445500 Sobic007G077900 Sobic007G077900 Sobic008G132000--Sobic007G077900 Sobic006G210000 Sobic006G210000 Sobic008G132000--Sobic006G210000 Sobic001G311500 Sobic001G311500 Sobic005G191900--Sobic001G311500 Sobic001G363500 Sobic001G363500 Sobic005G191900--Sobic001G363500 Sobic010G094700 Sobic010G094700 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic010G112100 Sobic010G112100 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic006G118700 Sobic006G118700 Sobic005G191900--Sobic006G118700 Sobic008G028700 Sobic008G028700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500 Sobic009G142000--Sobic003G294600 Sobic001G451300 Sobic001G451300 Sobic009G142000--Sobic001G451300 Sobic004G085000 Sobic004G085000 Sobic009G142000--Sobic004G085000 Sobic007G029200 Sobic007G029200 Sobic009G142000--Sobic007G029200 Sobic009G142000--Sobic001G453000 Sobic003G123100 Sobic003G123100 Sobic009G142000--Sobic003G123100 Sobic009G142000--Sobic008G132000 Sobic005G200900 Sobic005G200900 Sobic009G142000--Sobic005G200900 Sobic001G536000 Sobic001G536000 Sobic009G142000--Sobic001G536000 Sobic003G294600--Sobic008G002500 Sobic003G294600--Sobic009G142000 Sobic009G088000 Sobic009G088000 Sobic003G294600--Sobic009G088000 Sobic003G294600--Sobic001G453000 Sobic010G148932 Sobic010G148932 Sobic003G294600--Sobic010G148932 Sobic003G294600--Sobic007G077900 Sobic006G040800 Sobic006G040800 Sobic003G294600--Sobic006G040800 Sobic003G294600--Sobic003G445500 Sobic010G053600 Sobic010G053600 Sobic003G294600--Sobic010G053600 Sobic006G280200--Sobic001G291000 Sobic006G280200--Sobic010G148932 Sobic003G312100 Sobic003G312100 Sobic006G280200--Sobic003G312100 Sobic007G098500 Sobic007G098500 Sobic006G280200--Sobic007G098500 Sobic001G280900 Sobic001G280900 Sobic006G280200--Sobic001G280900 Sobic003G186000 Sobic003G186000 Sobic006G280200--Sobic003G186000 Sobic002G397500 Sobic002G397500 Sobic006G280200--Sobic002G397500 Sobic009G166100 Sobic009G166100 Sobic006G280200--Sobic009G166100 Sobic006G280200--Sobic008G132000 Sobic001G178700 Sobic001G178700 Sobic001G291000--Sobic001G178700 Sobic004G113400 Sobic004G113400 Sobic001G291000--Sobic004G113400 Sobic009G010600 Sobic009G010600 Sobic001G291000--Sobic009G010600 Sobic001G291000--Sobic006G280200 Sobic010G276900 Sobic010G276900 Sobic001G291000--Sobic010G276900 Sobic003G408600 Sobic003G408600 Sobic001G291000--Sobic003G408600 Sobic004G005100 Sobic004G005100 Sobic001G291000--Sobic004G005100 Sobic001G291000--Sobic001G280900 Sobic006G055200 Sobic006G055200 Sobic001G291000--Sobic006G055200 Sobic007G168300 Sobic007G168300 Sobic001G453000--Sobic007G168300 Sobic001G453000--Sobic003G294600 Sobic001G453000--Sobic009G142000 Sobic003G042400 Sobic003G042400 Sobic001G453000--Sobic003G042400 Sobic007G155500 Sobic007G155500 Sobic001G453000--Sobic007G155500 Sobic002G396500 Sobic002G396500 Sobic001G453000--Sobic002G396500 Sobic001G453000--Sobic004G085000 Sobic002G179400 Sobic002G179400 Sobic001G453000--Sobic002G179400 Sobic010G114900 Sobic010G114900 Sobic001G453000--Sobic010G114900 Sobic001G111600 Sobic001G111600 Sobic003G445500--Sobic001G111600 Sobic001G352900 Sobic001G352900 Sobic003G445500--Sobic001G352900 Sobic009G109200 Sobic009G109200 Sobic003G445500--Sobic009G109200 Sobic005G128400 Sobic005G128400 Sobic003G445500--Sobic005G128400 Sobic003G293200 Sobic003G293200 Sobic003G445500--Sobic003G293200 Sobic003G445500--Sobic005G191900 Sobic003G445500--Sobic002G397500 Sobic003G445500--Sobic003G294600 Sobic003G445500--Sobic010G053600 Sobic007G077900--Sobic003G312100 Sobic007G077900--Sobic010G114900 Sobic007G077900--Sobic010G148932 Sobic001G453400 Sobic001G453400 Sobic007G077900--Sobic001G453400 Sobic002G405500 Sobic002G405500 Sobic007G077900--Sobic002G405500 Sobic001G137000 Sobic001G137000 Sobic007G077900--Sobic001G137000 Sobic007G077900--Sobic003G294600 Sobic010G003400 Sobic010G003400 Sobic007G077900--Sobic010G003400 Sobic007G077900--Sobic002G396500 Sobic010G001100 Sobic010G001100 Sobic006G210000--Sobic010G001100 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic006G210000--Sobic005G191900
Octagon: transcription factors


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