Gene annotation
Transcriptome id Sobic.001G392100.1
Synonym OTP82, Sb01g037150
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
tetratricopeptide-like helical, putative, expressed
UniProt C5X1V8
Pfam PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF678
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08070 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os03g19980.2 : tetratricopeptide-like helical, putative, expressed
MaizeGDB (Corn) Zm00025a052530
Brachypodium KQK21951
Barley HORVU4Hr1G052680.24 , HORVU4Hr1G052680.22 , HORVU4Hr1G052680.23 , HORVU4Hr1G052680.20 , HORVU4Hr1G052680.21 , HORVU4Hr1G052680.9 , HORVU4Hr1G052680.8 , HORVU4Hr1G052680.7 , HORVU4Hr1G052680.6 , HORVU4Hr1G052680.5 , HORVU4Hr1G052680.4 , HORVU4Hr1G052680.3 , HORVU4Hr1G052680.2 , HORVU4Hr1G052680.1 , HORVU4Hr1G052680.19 , HORVU4Hr1G052680.18 , HORVU4Hr1G052680.17 , HORVU4Hr1G052680.16 , HORVU4Hr1G052680.15 , HORVU4Hr1G052680.14 , HORVU4Hr1G052680.13 , HORVU4Hr1G052680.12 , HORVU4Hr1G052680.11 , HORVU4Hr1G052680.10
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.003G239000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
3 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
4 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
5 Sobic.002G267600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
6 Sobic.001G391101 - -
7 Sobic.001G149100 vegetative storage protein, putative, expressed -
8 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
9 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.001G408300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
12 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
13 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
14 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
16 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
17 Sobic.007G187400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
18 Sobic.006G109400 pentatricopeptide, putative, expressed -
19 Sobic.006G069100 pentatricopeptide, putative, expressed -
20 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -


Gene co-expression network
sample Sobic001G392100 Sobic001G392100 Sobic003G128000 Sobic003G128000 Sobic001G392100--Sobic003G128000 Sobic003G239000 Sobic003G239000 Sobic001G392100--Sobic003G239000 Sobic003G322200 Sobic003G322200 Sobic001G392100--Sobic003G322200 Sobic008G083400 Sobic008G083400 Sobic001G392100--Sobic008G083400 Sobic002G267600 Sobic002G267600 Sobic001G392100--Sobic002G267600 Sobic001G391101 Sobic001G391101 Sobic001G392100--Sobic001G391101 Sobic001G149100 Sobic001G149100 Sobic001G392100--Sobic001G149100 Sobic009G253400 Sobic009G253400 Sobic001G392100--Sobic009G253400 Sobic008G066900 Sobic008G066900 Sobic001G392100--Sobic008G066900 Sobic003G128000--Sobic001G392100 Sobic009G155400 Sobic009G155400 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic003G128000--Sobic001G149100 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic003G239000--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic003G239000--Sobic004G241000 Sobic003G239000--Sobic002G267600 Sobic003G239000--Sobic001G149100 Sobic003G239000--Sobic009G155400 Sobic008G179000 Sobic008G179000 Sobic003G239000--Sobic008G179000 Sobic006G069100 Sobic006G069100 Sobic003G239000--Sobic006G069100 Sobic004G256900 Sobic004G256900 Sobic003G239000--Sobic004G256900 Sobic003G239000--Sobic008G066900 Sobic001G372800 Sobic001G372800 Sobic003G322200--Sobic001G372800 Sobic001G401400 Sobic001G401400 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic006G251600 Sobic006G251600 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic001G371100 Sobic001G371100 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic001G008500 Sobic001G008500 Sobic008G083400--Sobic001G008500 Sobic003G407800 Sobic003G407800 Sobic008G083400--Sobic003G407800 Sobic002G267600--Sobic008G163400 Sobic002G267600--Sobic003G239000 Sobic002G267600--Sobic001G149100 Sobic007G031300 Sobic007G031300 Sobic002G267600--Sobic007G031300 Sobic003G299200 Sobic003G299200 Sobic002G267600--Sobic003G299200 Sobic002G267600--Sobic008G179000 Sobic004G208100 Sobic004G208100 Sobic002G267600--Sobic004G208100 Sobic001G408300 Sobic001G408300 Sobic002G267600--Sobic001G408300 Sobic004G047500 Sobic004G047500 Sobic002G267600--Sobic004G047500 Sobic001G081300 Sobic001G081300 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic003G051500 Sobic003G051500 Sobic001G391101--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G391101--Sobic005G028300 Sobic007G179600 Sobic007G179600 Sobic001G391101--Sobic007G179600 Sobic003G419800 Sobic003G419800 Sobic001G391101--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic001G391101--Sobic003G014700 Sobic001G001200 Sobic001G001200 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000 Sobic001G149100--Sobic001G347100 Sobic001G149100--Sobic003G299200 Sobic010G252700 Sobic010G252700 Sobic001G149100--Sobic010G252700 Sobic001G149100--Sobic008G179000 Sobic001G149100--Sobic004G241000 Sobic001G149100--Sobic008G163400 Sobic001G149100--Sobic003G239000 Sobic001G149100--Sobic006G069100 Sobic001G149100--Sobic002G267600 Sobic002G218700 Sobic002G218700 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic001G261585 Sobic001G261585 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic002G183300 Sobic002G183300 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic002G132600 Sobic002G132600 Sobic009G253400--Sobic002G132600 Sobic005G210700 Sobic005G210700 Sobic008G066900--Sobic005G210700 Sobic008G066900--Sobic007G179600 Sobic008G066900--Sobic003G239000 Sobic008G099900 Sobic008G099900 Sobic008G066900--Sobic008G099900 Sobic008G066900--Sobic003G051500 Sobic006G085900 Sobic006G085900 Sobic008G066900--Sobic006G085900 Sobic008G066900--Sobic009G155400 Sobic008G066900--Sobic001G391101 Sobic010G256000 Sobic010G256000 Sobic008G066900--Sobic010G256000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.