Gene annotation
Transcriptome id Sobic.006G279900.2,Sobic.006G279900.1
Synonym Sb06g034040
Functional annotation RING finger protein 13, putative, expressed
UniProt C5YB45
Pfam PF13639 PF02225
Panther DB PTHR22765 PTHR22765:SF46
NCBI CDD KOG4628; Predicted E3 ubiquitin ligase
KEGG Orthology K15692; RNF13, E3 ubiquitin-protein ligase RNF13
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G71980 : Protease-associated (PA) RING/U-box zinc finger family protein
RAP-DB (Rice) LOC_Os03g07130.2,LOC_Os03g07130.1 : RING finger protein 13, putative, expressed
MaizeGDB (Corn) Zm00025a004673
Brachypodium KQJ85502 , PNT66496 , KQJ94780 , KQJ94781
Barley -
Wheat TraesCS2B02G625300 , TraesCS2D02G574200 , TraesCS2D02G574200 , TraesCS2A02G564000 , TraesCS2A02G564000 , TraesCS2B02G625300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G008400 F-box/LRR-repeat protein 3, putative, expressed -
2 Sobic.003G151300 serine/threonine-protein kinase, putative, expressed -
3 Sobic.006G213100 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
4 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
5 Sobic.004G232000 TLD family protein, putative, expressed -
6 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
7 Sobic.007G003600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@cytochrome P450, putative, expressed -
8 Sobic.006G100000 pentatricopeptide, putative, expressed -
9 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
10 Sobic.003G223500 WD domain, G-beta repeat domain containing protein, expressed K14299: nucleoporin SEH1
11 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
12 Sobic.001G335201 - -
13 Sobic.007G212800 frataxin, putative, expressed K19054: frataxin
14 Sobic.007G070300 OsFBL41 - F-box domain and LRR containing protein, expressed -
15 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
16 Sobic.001G321100 expressed protein -
17 Sobic.008G174800 DNA binding protein, putative, expressed -
18 Sobic.008G074300 glutathione S-transferase, putative, expressed K01800: maiA, maleylacetoacetate isomerase
19 Sobic.007G053400 nuclear matrix protein 1, putative, expressed -
20 Sobic.001G542800 formyl transferase, putative, expressed K01433: formyltetrahydrofolate deformylase


Gene co-expression network
sample Sobic006G279900 Sobic006G279900 Sobic008G008400 Sobic008G008400 Sobic006G279900--Sobic008G008400 Sobic003G151300 Sobic003G151300 Sobic006G279900--Sobic003G151300 Sobic006G213100 Sobic006G213100 Sobic006G279900--Sobic006G213100 Sobic010G046400 Sobic010G046400 Sobic006G279900--Sobic010G046400 Sobic004G232000 Sobic004G232000 Sobic006G279900--Sobic004G232000 Sobic003G128000 Sobic003G128000 Sobic006G279900--Sobic003G128000 Sobic007G003600 Sobic007G003600 Sobic006G279900--Sobic007G003600 Sobic006G100000 Sobic006G100000 Sobic006G279900--Sobic006G100000 Sobic003G229400 Sobic003G229400 Sobic006G279900--Sobic003G229400 Sobic008G008400--Sobic003G151300 Sobic009G013700 Sobic009G013700 Sobic008G008400--Sobic009G013700 Sobic009G026200 Sobic009G026200 Sobic008G008400--Sobic009G026200 Sobic010G105701 Sobic010G105701 Sobic008G008400--Sobic010G105701 Sobic009G030300 Sobic009G030300 Sobic008G008400--Sobic009G030300 Sobic004G067000 Sobic004G067000 Sobic008G008400--Sobic004G067000 Sobic004G134100 Sobic004G134100 Sobic008G008400--Sobic004G134100 Sobic003G101300 Sobic003G101300 Sobic008G008400--Sobic003G101300 Sobic003G347300 Sobic003G347300 Sobic008G008400--Sobic003G347300 Sobic003G151300--Sobic009G026200 Sobic003G151300--Sobic008G008400 Sobic008G174800 Sobic008G174800 Sobic003G151300--Sobic008G174800 Sobic010G224900 Sobic010G224900 Sobic003G151300--Sobic010G224900 Sobic009G162500 Sobic009G162500 Sobic003G151300--Sobic009G162500 Sobic001G107200 Sobic001G107200 Sobic003G151300--Sobic001G107200 Sobic008G021900 Sobic008G021900 Sobic003G151300--Sobic008G021900 Sobic004G203900 Sobic004G203900 Sobic003G151300--Sobic004G203900 Sobic003G151300--Sobic004G134100 Sobic006G133600 Sobic006G133600 Sobic006G213100--Sobic006G133600 Sobic009G214600 Sobic009G214600 Sobic006G213100--Sobic009G214600 Sobic003G397300 Sobic003G397300 Sobic006G213100--Sobic003G397300 Sobic003G328800 Sobic003G328800 Sobic006G213100--Sobic003G328800 Sobic007G191100 Sobic007G191100 Sobic006G213100--Sobic007G191100 Sobic001G056300 Sobic001G056300 Sobic006G213100--Sobic001G056300 Sobic003G044900 Sobic003G044900 Sobic006G213100--Sobic003G044900 Sobic004G220300 Sobic004G220300 Sobic006G213100--Sobic004G220300 Sobic007G099500 Sobic007G099500 Sobic006G213100--Sobic007G099500 Sobic010G173900 Sobic010G173900 Sobic010G046400--Sobic010G173900 Sobic004G227500 Sobic004G227500 Sobic010G046400--Sobic004G227500 Sobic002G334600 Sobic002G334600 Sobic010G046400--Sobic002G334600 Sobic002G218700 Sobic002G218700 Sobic010G046400--Sobic002G218700 Sobic007G070300 Sobic007G070300 Sobic010G046400--Sobic007G070300 Sobic002G367300 Sobic002G367300 Sobic010G046400--Sobic002G367300 Sobic009G011500 Sobic009G011500 Sobic010G046400--Sobic009G011500 Sobic008G099500 Sobic008G099500 Sobic010G046400--Sobic008G099500 Sobic001G247200 Sobic001G247200 Sobic010G046400--Sobic001G247200 Sobic001G087100 Sobic001G087100 Sobic004G232000--Sobic001G087100 Sobic007G043900 Sobic007G043900 Sobic004G232000--Sobic007G043900 Sobic004G232000--Sobic009G030300 Sobic002G076000 Sobic002G076000 Sobic004G232000--Sobic002G076000 Sobic002G259800 Sobic002G259800 Sobic004G232000--Sobic002G259800 Sobic005G084100 Sobic005G084100 Sobic004G232000--Sobic005G084100 Sobic001G043400 Sobic001G043400 Sobic004G232000--Sobic001G043400 Sobic009G040800 Sobic009G040800 Sobic004G232000--Sobic009G040800 Sobic005G009200 Sobic005G009200 Sobic004G232000--Sobic005G009200 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic009G155400 Sobic009G155400 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic008G163400 Sobic008G163400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G239000 Sobic003G239000 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic001G254400 Sobic001G254400 Sobic003G128000--Sobic001G254400 Sobic007G003600--Sobic006G279900 Sobic003G073300 Sobic003G073300 Sobic007G003600--Sobic003G073300 Sobic001G321100 Sobic001G321100 Sobic007G003600--Sobic001G321100 Sobic005G020400 Sobic005G020400 Sobic007G003600--Sobic005G020400 Sobic005G054700 Sobic005G054700 Sobic007G003600--Sobic005G054700 Sobic001G362500 Sobic001G362500 Sobic007G003600--Sobic001G362500 Sobic007G003600--Sobic003G229400 Sobic009G013800 Sobic009G013800 Sobic007G003600--Sobic009G013800 Sobic007G003600--Sobic004G220300 Sobic006G100000--Sobic009G040800 Sobic009G015800 Sobic009G015800 Sobic006G100000--Sobic009G015800 Sobic003G442000 Sobic003G442000 Sobic006G100000--Sobic003G442000 Sobic010G209700 Sobic010G209700 Sobic006G100000--Sobic010G209700 Sobic003G343600 Sobic003G343600 Sobic006G100000--Sobic003G343600 Sobic010G278600 Sobic010G278600 Sobic006G100000--Sobic010G278600 Sobic002G299100 Sobic002G299100 Sobic006G100000--Sobic002G299100 Sobic004G197900 Sobic004G197900 Sobic006G100000--Sobic004G197900 Sobic008G152900 Sobic008G152900 Sobic006G100000--Sobic008G152900 Sobic010G073600 Sobic010G073600 Sobic003G229400--Sobic010G073600 Sobic003G128600 Sobic003G128600 Sobic003G229400--Sobic003G128600 Sobic006G215100 Sobic006G215100 Sobic003G229400--Sobic006G215100 Sobic010G035801 Sobic010G035801 Sobic003G229400--Sobic010G035801 Sobic003G229400--Sobic006G100000 Sobic003G229400--Sobic004G197900 Sobic003G229400--Sobic007G191100 Sobic006G130200 Sobic006G130200 Sobic003G229400--Sobic006G130200 Sobic002G033600 Sobic002G033600 Sobic003G229400--Sobic002G033600
Octagon: transcription factors


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