Gene annotation
Transcriptome id Sobic.001G542800.1
Synonym Sb01g050510
Functional annotation formyl transferase, putative, expressed
UniProt C5WMW1
Pfam PF00551
Panther DB PTHR10520 PTHR10520:SF7
NCBI CDD KOG3076; 5'-phosphoribosylglycinamide formyltransferase
KEGG Orthology K01433; formyltetrahydrofolate deformylase
Gene Ontology GO:0016742; hydroxymethyl-, formyl- and related transferase activity GO:0009058biosynthetic process GO:0008864formyltetrahydrofolate deformylase activity GO:0006189'de novo' IMP biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G17360 : Formyl transferase
RAP-DB (Rice) LOC_Os03g01222.1 : formyl transferase, putative, expressed
MaizeGDB (Corn) Zm00025a053606
Brachypodium KQK24163
Barley HORVU4Hr1G088440.10 , HORVU4Hr1G088440.11 , HORVU4Hr1G088440.12 , HORVU4Hr1G088440.13 , HORVU4Hr1G088440.14 , HORVU4Hr1G088440.15 , HORVU4Hr1G088440.16 , HORVU4Hr1G088440.17 , HORVU4Hr1G088440.18 , HORVU4Hr1G088440.19 , HORVU4Hr1G088440.3 , HORVU4Hr1G088440.6 , HORVU4Hr1G088440.7 , HORVU4Hr1G088440.4 , HORVU4Hr1G088440.5 , HORVU4Hr1G088440.8 , HORVU4Hr1G088440.9
Wheat TraesCS5A02G540400 , TraesCS5A02G540400 , TraesCS4D02G363700 , TraesCS4D02G363700 , TraesCS4B02G373600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216000 DAG protein, chloroplast precursor, putative, expressed -
2 Sobic.004G247800 SET domain-containing protein, putative, expressed -
3 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
4 Sobic.001G096300 deoxyhypusine synthase, putative, expressed K00809: DHPS, deoxyhypusine synthase
5 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
6 Sobic.001G296400 palmitoyl-protein thioesterase 1 precursor, putative, expressed K01074: palmitoyl-protein thioesterase
7 Sobic.004G283600 O-acyltransferase, putative, expressed K13519: LPT1, lysophospholipid acyltransferase
8 Sobic.001G478600 uroporphyrinogen III synthase, putative, expressed K01719: hemD, uroporphyrinogen-III synthase
9 Sobic.001G127100 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
10 Sobic.004G175600 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.006G279900 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
12 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.003G380400 expressed protein -
14 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
15 Sobic.003G176200 - -
16 Sobic.007G206100 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
17 Sobic.003G314100 AGAP000951-PA, putative, expressed -
18 Sobic.004G208600 glycine-rich protein, putative, expressed -
19 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
20 Sobic.002G189600 expressed protein -


Gene co-expression network
sample Sobic001G542800 Sobic001G542800 Sobic006G216000 Sobic006G216000 Sobic001G542800--Sobic006G216000 Sobic004G247800 Sobic004G247800 Sobic001G542800--Sobic004G247800 Sobic006G095800 Sobic006G095800 Sobic001G542800--Sobic006G095800 Sobic001G096300 Sobic001G096300 Sobic001G542800--Sobic001G096300 Sobic002G344500 Sobic002G344500 Sobic001G542800--Sobic002G344500 Sobic001G296400 Sobic001G296400 Sobic001G542800--Sobic001G296400 Sobic004G283600 Sobic004G283600 Sobic001G542800--Sobic004G283600 Sobic001G478600 Sobic001G478600 Sobic001G542800--Sobic001G478600 Sobic001G127100 Sobic001G127100 Sobic001G542800--Sobic001G127100 Sobic004G291400 Sobic004G291400 Sobic006G216000--Sobic004G291400 Sobic002G253100 Sobic002G253100 Sobic006G216000--Sobic002G253100 Sobic003G119400 Sobic003G119400 Sobic006G216000--Sobic003G119400 Sobic006G252100 Sobic006G252100 Sobic006G216000--Sobic006G252100 Sobic002G083400 Sobic002G083400 Sobic006G216000--Sobic002G083400 Sobic001G152000 Sobic001G152000 Sobic006G216000--Sobic001G152000 Sobic006G216000--Sobic001G296400 Sobic001G471600 Sobic001G471600 Sobic006G216000--Sobic001G471600 Sobic001G335201 Sobic001G335201 Sobic006G216000--Sobic001G335201 Sobic002G172600 Sobic002G172600 Sobic004G247800--Sobic002G172600 Sobic004G070200 Sobic004G070200 Sobic004G247800--Sobic004G070200 Sobic007G116100 Sobic007G116100 Sobic004G247800--Sobic007G116100 Sobic006G263800 Sobic006G263800 Sobic004G247800--Sobic006G263800 Sobic004G247800--Sobic001G542800 Sobic001G228300 Sobic001G228300 Sobic004G247800--Sobic001G228300 Sobic008G021700 Sobic008G021700 Sobic004G247800--Sobic008G021700 Sobic004G247800--Sobic006G095800 Sobic002G191100 Sobic002G191100 Sobic004G247800--Sobic002G191100 Sobic009G214200 Sobic009G214200 Sobic006G095800--Sobic009G214200 Sobic006G032900 Sobic006G032900 Sobic006G095800--Sobic006G032900 Sobic009G103600 Sobic009G103600 Sobic006G095800--Sobic009G103600 Sobic006G095800--Sobic002G191100 Sobic001G322600 Sobic001G322600 Sobic006G095800--Sobic001G322600 Sobic006G010400 Sobic006G010400 Sobic006G095800--Sobic006G010400 Sobic004G019500 Sobic004G019500 Sobic006G095800--Sobic004G019500 Sobic004G144400 Sobic004G144400 Sobic006G095800--Sobic004G144400 Sobic006G095800--Sobic002G344500 Sobic003G196900 Sobic003G196900 Sobic001G096300--Sobic003G196900 Sobic010G172500 Sobic010G172500 Sobic001G096300--Sobic010G172500 Sobic006G280600 Sobic006G280600 Sobic001G096300--Sobic006G280600 Sobic001G263000 Sobic001G263000 Sobic001G096300--Sobic001G263000 Sobic007G171950 Sobic007G171950 Sobic001G096300--Sobic007G171950 Sobic001G307900 Sobic001G307900 Sobic001G096300--Sobic001G307900 Sobic001G067300 Sobic001G067300 Sobic001G096300--Sobic001G067300 Sobic001G464100 Sobic001G464100 Sobic001G096300--Sobic001G464100 Sobic007G095500 Sobic007G095500 Sobic001G096300--Sobic007G095500 Sobic003G322200 Sobic003G322200 Sobic002G344500--Sobic003G322200 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic003G407600 Sobic003G407600 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic001G422500 Sobic001G422500 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic003G071600 Sobic003G071600 Sobic001G296400--Sobic003G071600 Sobic004G175600 Sobic004G175600 Sobic001G296400--Sobic004G175600 Sobic004G208600 Sobic004G208600 Sobic001G296400--Sobic004G208600 Sobic001G296400--Sobic006G216000 Sobic001G063800 Sobic001G063800 Sobic001G296400--Sobic001G063800 Sobic003G420900 Sobic003G420900 Sobic001G296400--Sobic003G420900 Sobic001G296400--Sobic007G171950 Sobic008G173000 Sobic008G173000 Sobic001G296400--Sobic008G173000 Sobic001G384800 Sobic001G384800 Sobic001G296400--Sobic001G384800 Sobic009G256000 Sobic009G256000 Sobic004G283600--Sobic009G256000 Sobic004G060100 Sobic004G060100 Sobic004G283600--Sobic004G060100 Sobic007G161200 Sobic007G161200 Sobic004G283600--Sobic007G161200 Sobic005G018800 Sobic005G018800 Sobic004G283600--Sobic005G018800 Sobic005G004100 Sobic005G004100 Sobic004G283600--Sobic005G004100 Sobic008G021200 Sobic008G021200 Sobic004G283600--Sobic008G021200 Sobic003G200800 Sobic003G200800 Sobic004G283600--Sobic003G200800 Sobic003G165101 Sobic003G165101 Sobic004G283600--Sobic003G165101 Sobic001G004200 Sobic001G004200 Sobic004G283600--Sobic001G004200 Sobic001G433100 Sobic001G433100 Sobic001G478600--Sobic001G433100 Sobic010G221600 Sobic010G221600 Sobic001G478600--Sobic010G221600 Sobic006G155100 Sobic006G155100 Sobic001G478600--Sobic006G155100 Sobic008G090900 Sobic008G090900 Sobic001G478600--Sobic008G090900 Sobic002G189600 Sobic002G189600 Sobic001G478600--Sobic002G189600 Sobic004G003900 Sobic004G003900 Sobic001G478600--Sobic004G003900 Sobic001G025800 Sobic001G025800 Sobic001G478600--Sobic001G025800 Sobic001G003900 Sobic001G003900 Sobic001G478600--Sobic001G003900 Sobic008G011300 Sobic008G011300 Sobic001G478600--Sobic008G011300 Sobic001G168900 Sobic001G168900 Sobic001G127100--Sobic001G168900 Sobic001G042200 Sobic001G042200 Sobic001G127100--Sobic001G042200 Sobic010G007100 Sobic010G007100 Sobic001G127100--Sobic010G007100 Sobic010G232900 Sobic010G232900 Sobic001G127100--Sobic010G232900 Sobic009G074700 Sobic009G074700 Sobic001G127100--Sobic009G074700 Sobic003G142700 Sobic003G142700 Sobic001G127100--Sobic003G142700 Sobic001G291800 Sobic001G291800 Sobic001G127100--Sobic001G291800 Sobic001G515000 Sobic001G515000 Sobic001G127100--Sobic001G515000 Sobic008G098600 Sobic008G098600 Sobic001G127100--Sobic008G098600
Octagon: transcription factors


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