Gene annotation
Transcriptome id Sobic.004G247800.1
Synonym Sb04g028760
Functional annotation SET domain-containing protein, putative, expressed
UniProt C5XZA7
Pfam PF00856 PF09273
Panther DB PTHR13271 PTHR13271:SF25
NCBI CDD KOG1337; N-methyltransferase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G24610 : Rubisco methyltransferase family protein
RAP-DB (Rice) LOC_Os02g50100.1 : SET domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032665
Brachypodium KQK01583
Barley HORVU6Hr1G073650.3 , HORVU6Hr1G073650.2 , HORVU6Hr1G073650.1 , HORVU6Hr1G073650.4
Wheat TraesCS6B02G325900 , TraesCS6A02G296000 , TraesCS6D02G276400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
2 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
3 Sobic.007G116100 thioredoxin, putative, expressed -
4 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
5 Sobic.001G542800 formyl transferase, putative, expressed K01433: formyltetrahydrofolate deformylase
6 Sobic.001G228300 SAP domain containing protein, expressed -
7 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
8 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
10 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
11 Sobic.003G039300 expressed protein -
12 Sobic.008G147400 "responsible for fertility restoration, localized in anthers"(PubMedID : 20585750)@tetratricopeptide-like helical, putative, expressed -
13 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
14 Sobic.007G060900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed -
15 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.010G270900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
18 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
19 Sobic.001G537700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K13179: DDX18, ATP-dependent RNA helicase DDX18/HAS1
20 Sobic.003G358900 transporter, major facilitator family, putative, expressed K08193: MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other


Gene co-expression network
sample Sobic004G247800 Sobic004G247800 Sobic002G172600 Sobic002G172600 Sobic004G247800--Sobic002G172600 Sobic004G070200 Sobic004G070200 Sobic004G247800--Sobic004G070200 Sobic007G116100 Sobic007G116100 Sobic004G247800--Sobic007G116100 Sobic006G263800 Sobic006G263800 Sobic004G247800--Sobic006G263800 Sobic001G542800 Sobic001G542800 Sobic004G247800--Sobic001G542800 Sobic001G228300 Sobic001G228300 Sobic004G247800--Sobic001G228300 Sobic008G021700 Sobic008G021700 Sobic004G247800--Sobic008G021700 Sobic006G095800 Sobic006G095800 Sobic004G247800--Sobic006G095800 Sobic002G191100 Sobic002G191100 Sobic004G247800--Sobic002G191100 Sobic002G172600--Sobic004G070200 Sobic002G172600--Sobic004G247800 Sobic010G143400 Sobic010G143400 Sobic002G172600--Sobic010G143400 Sobic006G271900 Sobic006G271900 Sobic002G172600--Sobic006G271900 Sobic001G437801 Sobic001G437801 Sobic002G172600--Sobic001G437801 Sobic004G216700 Sobic004G216700 Sobic002G172600--Sobic004G216700 Sobic007G131200 Sobic007G131200 Sobic002G172600--Sobic007G131200 Sobic001G254400 Sobic001G254400 Sobic002G172600--Sobic001G254400 Sobic001G040600 Sobic001G040600 Sobic002G172600--Sobic001G040600 Sobic003G222600 Sobic003G222600 Sobic004G070200--Sobic003G222600 Sobic003G030400 Sobic003G030400 Sobic004G070200--Sobic003G030400 Sobic004G070200--Sobic007G131200 Sobic004G070200--Sobic002G172600 Sobic006G110200 Sobic006G110200 Sobic004G070200--Sobic006G110200 Sobic009G137000 Sobic009G137000 Sobic004G070200--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic004G070200--Sobic001G114400 Sobic004G070200--Sobic002G191100 Sobic001G246200 Sobic001G246200 Sobic004G070200--Sobic001G246200 Sobic010G027200 Sobic010G027200 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic002G140000 Sobic002G140000 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic007G116100--Sobic001G099000 Sobic007G015300 Sobic007G015300 Sobic007G116100--Sobic007G015300 Sobic006G237100 Sobic006G237100 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic006G263800--Sobic001G281500 Sobic006G263800--Sobic005G022800 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic006G216000 Sobic006G216000 Sobic001G542800--Sobic006G216000 Sobic001G542800--Sobic004G247800 Sobic001G542800--Sobic006G095800 Sobic001G096300 Sobic001G096300 Sobic001G542800--Sobic001G096300 Sobic002G344500 Sobic002G344500 Sobic001G542800--Sobic002G344500 Sobic001G296400 Sobic001G296400 Sobic001G542800--Sobic001G296400 Sobic004G283600 Sobic004G283600 Sobic001G542800--Sobic004G283600 Sobic001G478600 Sobic001G478600 Sobic001G542800--Sobic001G478600 Sobic001G127100 Sobic001G127100 Sobic001G542800--Sobic001G127100 Sobic001G395300 Sobic001G395300 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic001G228300--Sobic007G116100 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic001G228300--Sobic006G110200 Sobic004G151900 Sobic004G151900 Sobic008G021700--Sobic004G151900 Sobic009G251300 Sobic009G251300 Sobic008G021700--Sobic009G251300 Sobic008G021700--Sobic005G022800 Sobic004G246800 Sobic004G246800 Sobic008G021700--Sobic004G246800 Sobic001G076200 Sobic001G076200 Sobic008G021700--Sobic001G076200 Sobic002G209600 Sobic002G209600 Sobic008G021700--Sobic002G209600 Sobic001G142400 Sobic001G142400 Sobic008G021700--Sobic001G142400 Sobic005G077933 Sobic005G077933 Sobic008G021700--Sobic005G077933 Sobic001G061600 Sobic001G061600 Sobic008G021700--Sobic001G061600 Sobic009G214200 Sobic009G214200 Sobic006G095800--Sobic009G214200 Sobic006G032900 Sobic006G032900 Sobic006G095800--Sobic006G032900 Sobic009G103600 Sobic009G103600 Sobic006G095800--Sobic009G103600 Sobic006G095800--Sobic002G191100 Sobic001G322600 Sobic001G322600 Sobic006G095800--Sobic001G322600 Sobic006G010400 Sobic006G010400 Sobic006G095800--Sobic006G010400 Sobic004G019500 Sobic004G019500 Sobic006G095800--Sobic004G019500 Sobic004G144400 Sobic004G144400 Sobic006G095800--Sobic004G144400 Sobic006G095800--Sobic002G344500 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic003G039300 Sobic003G039300 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic002G191100--Sobic009G214200 Sobic002G191100--Sobic004G070200
Octagon: transcription factors


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