Gene annotation
Transcriptome id Sobic.006G100000.1
Synonym Sb06g018360
Functional annotation pentatricopeptide, putative, expressed
UniProt C5Y9D8
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF155
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09450 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g37720.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a011172
Brachypodium -
Barley HORVU6Hr1G012580.2 , HORVU6Hr1G012580.3 , HORVU6Hr1G012580.1
Wheat TraesCS2A02G318100 , TraesCS2D02G315700 , TraesCS2B02G336200
Populus -


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cDNA sequences
Sobic.006G100000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040800 helicase, putative, expressed K10844: ERCC2, DNA excision repair protein ERCC-2
2 Sobic.009G015800 expressed protein -
3 Sobic.003G442000 IPP transferase, putative, expressed K00791: miaA, tRNA dimethylallyltransferase
4 Sobic.010G209700 expressed protein -
5 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.010G278600 FG-GAP repeat-containing protein, putative, expressed -
7 Sobic.002G299100 SET domain containing protein, expressed -
8 Sobic.004G197900 - -
9 Sobic.008G152900 MATH domain containing protein, expressed -
10 Sobic.004G353400 leucine-rich repeat-containing protein 40, putative, expressed -
11 Sobic.010G201900 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
12 Sobic.003G229400 CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed -
13 Sobic.010G035801 - -
14 Sobic.004G232000 TLD family protein, putative, expressed -
15 Sobic.005G015100 OsFBX291 - F-box domain containing protein, expressed -
16 Sobic.009G102000 OsFBX9 - F-box domain containing protein, expressed -
17 Sobic.001G294100 ICE-like protease p20 domain containing protein, expressed -
18 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
19 Sobic.006G078600 expressed protein K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
20 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1


Gene co-expression network
sample Sobic006G100000 Sobic006G100000 Sobic009G040800 Sobic009G040800 Sobic006G100000--Sobic009G040800 Sobic009G015800 Sobic009G015800 Sobic006G100000--Sobic009G015800 Sobic003G442000 Sobic003G442000 Sobic006G100000--Sobic003G442000 Sobic010G209700 Sobic010G209700 Sobic006G100000--Sobic010G209700 Sobic003G343600 Sobic003G343600 Sobic006G100000--Sobic003G343600 Sobic010G278600 Sobic010G278600 Sobic006G100000--Sobic010G278600 Sobic002G299100 Sobic002G299100 Sobic006G100000--Sobic002G299100 Sobic004G197900 Sobic004G197900 Sobic006G100000--Sobic004G197900 Sobic008G152900 Sobic008G152900 Sobic006G100000--Sobic008G152900 Sobic009G040800--Sobic010G278600 Sobic006G091000 Sobic006G091000 Sobic009G040800--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic009G040800--Sobic005G040900 Sobic009G129600 Sobic009G129600 Sobic009G040800--Sobic009G129600 Sobic001G335900 Sobic001G335900 Sobic009G040800--Sobic001G335900 Sobic008G149800 Sobic008G149800 Sobic009G040800--Sobic008G149800 Sobic004G246100 Sobic004G246100 Sobic009G040800--Sobic004G246100 Sobic001G042200 Sobic001G042200 Sobic009G040800--Sobic001G042200 Sobic004G353400 Sobic004G353400 Sobic009G040800--Sobic004G353400 Sobic005G015100 Sobic005G015100 Sobic009G015800--Sobic005G015100 Sobic009G225200 Sobic009G225200 Sobic009G015800--Sobic009G225200 Sobic002G259800 Sobic002G259800 Sobic009G015800--Sobic002G259800 Sobic002G158700 Sobic002G158700 Sobic009G015800--Sobic002G158700 Sobic002G421700 Sobic002G421700 Sobic009G015800--Sobic002G421700 Sobic001G087100 Sobic001G087100 Sobic009G015800--Sobic001G087100 Sobic004G232000 Sobic004G232000 Sobic009G015800--Sobic004G232000 Sobic005G015900 Sobic005G015900 Sobic009G015800--Sobic005G015900 Sobic001G315100 Sobic001G315100 Sobic009G015800--Sobic001G315100 Sobic005G009200 Sobic005G009200 Sobic003G442000--Sobic005G009200 Sobic003G442000--Sobic005G015900 Sobic004G018300 Sobic004G018300 Sobic003G442000--Sobic004G018300 Sobic003G258900 Sobic003G258900 Sobic003G442000--Sobic003G258900 Sobic010G202600 Sobic010G202600 Sobic003G442000--Sobic010G202600 Sobic009G074700 Sobic009G074700 Sobic003G442000--Sobic009G074700 Sobic002G197100 Sobic002G197100 Sobic003G442000--Sobic002G197100 Sobic003G442000--Sobic002G158700 Sobic001G090400 Sobic001G090400 Sobic003G442000--Sobic001G090400 Sobic010G035801 Sobic010G035801 Sobic010G209700--Sobic010G035801 Sobic010G209700--Sobic006G100000 Sobic006G144000 Sobic006G144000 Sobic010G209700--Sobic006G144000 Sobic007G158900 Sobic007G158900 Sobic010G209700--Sobic007G158900 Sobic003G229400 Sobic003G229400 Sobic010G209700--Sobic003G229400 Sobic010G209700--Sobic004G353400 Sobic009G227100 Sobic009G227100 Sobic010G209700--Sobic009G227100 Sobic004G026100 Sobic004G026100 Sobic010G209700--Sobic004G026100 Sobic003G079750 Sobic003G079750 Sobic010G209700--Sobic003G079750 Sobic003G140900 Sobic003G140900 Sobic003G343600--Sobic003G140900 Sobic002G223300 Sobic002G223300 Sobic003G343600--Sobic002G223300 Sobic005G072400 Sobic005G072400 Sobic003G343600--Sobic005G072400 Sobic006G248500 Sobic006G248500 Sobic003G343600--Sobic006G248500 Sobic004G285000 Sobic004G285000 Sobic003G343600--Sobic004G285000 Sobic002G268900 Sobic002G268900 Sobic003G343600--Sobic002G268900 Sobic005G198200 Sobic005G198200 Sobic003G343600--Sobic005G198200 Sobic006G278200 Sobic006G278200 Sobic003G343600--Sobic006G278200 Sobic004G085300 Sobic004G085300 Sobic003G343600--Sobic004G085300 Sobic010G278600--Sobic009G040800 Sobic010G278600--Sobic009G074700 Sobic002G408600 Sobic002G408600 Sobic010G278600--Sobic002G408600 Sobic010G278600--Sobic004G285000 Sobic004G236800 Sobic004G236800 Sobic010G278600--Sobic004G236800 Sobic010G278600--Sobic004G246100 Sobic010G278600--Sobic001G042200 Sobic006G131200 Sobic006G131200 Sobic010G278600--Sobic006G131200 Sobic001G393700 Sobic001G393700 Sobic010G278600--Sobic001G393700 Sobic009G137100 Sobic009G137100 Sobic002G299100--Sobic009G137100 Sobic002G299100--Sobic002G197100 Sobic002G370900 Sobic002G370900 Sobic002G299100--Sobic002G370900 Sobic002G299100--Sobic004G246100 Sobic001G176200 Sobic001G176200 Sobic002G299100--Sobic001G176200 Sobic002G299100--Sobic009G040800 Sobic006G082900 Sobic006G082900 Sobic002G299100--Sobic006G082900 Sobic005G154500 Sobic005G154500 Sobic002G299100--Sobic005G154500 Sobic009G199500 Sobic009G199500 Sobic002G299100--Sobic009G199500 Sobic008G117200 Sobic008G117200 Sobic004G197900--Sobic008G117200 Sobic004G197900--Sobic002G421700 Sobic004G197900--Sobic008G152900 Sobic006G128800 Sobic006G128800 Sobic004G197900--Sobic006G128800 Sobic001G425000 Sobic001G425000 Sobic004G197900--Sobic001G425000 Sobic002G051450 Sobic002G051450 Sobic004G197900--Sobic002G051450 Sobic004G197900--Sobic005G015100 Sobic008G034600 Sobic008G034600 Sobic004G197900--Sobic008G034600 Sobic010G263800 Sobic010G263800 Sobic004G197900--Sobic010G263800 Sobic008G152900--Sobic005G015900 Sobic001G464200 Sobic001G464200 Sobic008G152900--Sobic001G464200 Sobic008G152900--Sobic001G425000 Sobic008G152900--Sobic001G176200 Sobic004G219100 Sobic004G219100 Sobic008G152900--Sobic004G219100 Sobic008G152900--Sobic004G197900 Sobic006G078600 Sobic006G078600 Sobic008G152900--Sobic006G078600 Sobic004G031700 Sobic004G031700 Sobic008G152900--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic008G152900--Sobic003G445400
Octagon: transcription factors


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