Gene annotation
Transcriptome id Sobic.001G141300.1
Synonym Sb01g012300, GR-RBP7, CCR2, ATGRP7, GRP7
Functional annotation RNA recognition motif containing protein, expressed
UniProt A0A1B6QIY5 , Q9FUD5 , Q99070
Pfam PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G39260 : cold, circadian rhythm, and RNA binding 1
RAP-DB (Rice) LOC_Os12g43600.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a017130 , Zm00025a025109 , Zm00025a004811
Brachypodium KQK13837 , KQJ85674
Barley -
Wheat TraesCS5B02G013200
Populus -


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cDNA sequences
Sobic.001G141300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G185900 RNA recognition motif containing protein, expressed -
2 Sobic.003G401400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
3 Sobic.009G197000 O-methyltransferase family 2 protein (At)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
4 Sobic.001G426400 expressed protein -
5 Sobic.001G191200 a marker of bud dormancy(PubMedID : 16443694)@auxin-repressed protein, putative, expressed -
6 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
7 Sobic.006G279800 expressed protein -
8 Sobic.001G423100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein K09562: HSPBP1, hsp70-interacting protein
9 Sobic.001G078200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G171800 WD domain, G-beta repeat domain containing protein, expressed K14830: MAK11, protein MAK11
11 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
14 Sobic.009G154600 glycosyl hydrolases family 17, putative, expressed -
15 Sobic.001G341300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATP-dependent protease, putative, expressed -
16 Sobic.002G338300 expressed protein -
17 Sobic.003G406700 expressed protein -
18 Sobic.006G051100 expressed protein -
19 Sobic.006G279700 POT family protein, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
20 Sobic.005G085200 OsFBK25 - F-box domain and kelch repeat containing protein, expressed -


Gene co-expression network
sample Sobic001G141300 Sobic001G141300 Sobic008G185900 Sobic008G185900 Sobic001G141300--Sobic008G185900 Sobic003G401400 Sobic003G401400 Sobic001G141300--Sobic003G401400 Sobic009G197000 Sobic009G197000 Sobic001G141300--Sobic009G197000 Sobic001G426400 Sobic001G426400 Sobic001G141300--Sobic001G426400 Sobic001G191200 Sobic001G191200 Sobic001G141300--Sobic001G191200 Sobic006G265400 Sobic006G265400 Sobic001G141300--Sobic006G265400 Sobic006G279800 Sobic006G279800 Sobic001G141300--Sobic006G279800 Sobic001G423100 Sobic001G423100 Sobic001G141300--Sobic001G423100 Sobic001G078200 Sobic001G078200 Sobic001G141300--Sobic001G078200 Sobic008G185900--Sobic001G141300 Sobic008G185900--Sobic003G401400 Sobic001G341300 Sobic001G341300 Sobic008G185900--Sobic001G341300 Sobic002G376400 Sobic002G376400 Sobic008G185900--Sobic002G376400 Sobic008G133500 Sobic008G133500 Sobic008G185900--Sobic008G133500 Sobic002G279100 Sobic002G279100 Sobic008G185900--Sobic002G279100 Sobic004G216700 Sobic004G216700 Sobic008G185900--Sobic004G216700 Sobic008G171800 Sobic008G171800 Sobic008G185900--Sobic008G171800 Sobic006G241200 Sobic006G241200 Sobic008G185900--Sobic006G241200 Sobic003G401400--Sobic001G141300 Sobic003G401400--Sobic008G185900 Sobic003G401400--Sobic002G376400 Sobic001G081400 Sobic001G081400 Sobic003G401400--Sobic001G081400 Sobic004G309500 Sobic004G309500 Sobic003G401400--Sobic004G309500 Sobic007G034400 Sobic007G034400 Sobic003G401400--Sobic007G034400 Sobic003G401400--Sobic008G171800 Sobic001G202400 Sobic001G202400 Sobic003G401400--Sobic001G202400 Sobic004G028400 Sobic004G028400 Sobic003G401400--Sobic004G028400 Sobic010G143400 Sobic010G143400 Sobic009G197000--Sobic010G143400 Sobic005G085200 Sobic005G085200 Sobic009G197000--Sobic005G085200 Sobic008G013900 Sobic008G013900 Sobic009G197000--Sobic008G013900 Sobic004G345900 Sobic004G345900 Sobic009G197000--Sobic004G345900 Sobic009G197000--Sobic001G191200 Sobic002G331000 Sobic002G331000 Sobic009G197000--Sobic002G331000 Sobic007G131200 Sobic007G131200 Sobic009G197000--Sobic007G131200 Sobic009G197000--Sobic001G141300 Sobic003G406700 Sobic003G406700 Sobic009G197000--Sobic003G406700 Sobic001G426400--Sobic006G265400 Sobic008G148400 Sobic008G148400 Sobic001G426400--Sobic008G148400 Sobic009G238100 Sobic009G238100 Sobic001G426400--Sobic009G238100 Sobic009G032100 Sobic009G032100 Sobic001G426400--Sobic009G032100 Sobic004G249500 Sobic004G249500 Sobic001G426400--Sobic004G249500 Sobic003G255100 Sobic003G255100 Sobic001G426400--Sobic003G255100 Sobic003G030400 Sobic003G030400 Sobic001G426400--Sobic003G030400 Sobic007G060900 Sobic007G060900 Sobic001G426400--Sobic007G060900 Sobic001G426400--Sobic007G131200 Sobic001G191200--Sobic003G406700 Sobic001G191200--Sobic001G078200 Sobic009G154600 Sobic009G154600 Sobic001G191200--Sobic009G154600 Sobic001G377000 Sobic001G377000 Sobic001G191200--Sobic001G377000 Sobic009G213400 Sobic009G213400 Sobic001G191200--Sobic009G213400 Sobic001G191200--Sobic005G085200 Sobic003G107300 Sobic003G107300 Sobic001G191200--Sobic003G107300 Sobic001G191200--Sobic001G423100 Sobic001G225500 Sobic001G225500 Sobic001G191200--Sobic001G225500 Sobic006G265400--Sobic001G426400 Sobic006G265400--Sobic008G148400 Sobic006G265400--Sobic009G238100 Sobic006G265400--Sobic007G131200 Sobic006G265400--Sobic007G060900 Sobic006G265400--Sobic001G141300 Sobic006G265400--Sobic009G197000 Sobic001G255400 Sobic001G255400 Sobic006G265400--Sobic001G255400 Sobic006G265400--Sobic010G143400 Sobic006G279800--Sobic005G085200 Sobic006G279800--Sobic001G191200 Sobic006G279800--Sobic003G406700 Sobic006G279800--Sobic001G423100 Sobic006G279800--Sobic009G197000 Sobic005G085600 Sobic005G085600 Sobic006G279800--Sobic005G085600 Sobic010G057300 Sobic010G057300 Sobic006G279800--Sobic010G057300 Sobic006G279800--Sobic001G225500 Sobic006G279800--Sobic001G377000 Sobic001G423100--Sobic009G154600 Sobic001G423100--Sobic008G148400 Sobic001G423100--Sobic001G191200 Sobic001G423100--Sobic003G406700 Sobic001G423100--Sobic001G078200 Sobic001G031300 Sobic001G031300 Sobic001G423100--Sobic001G031300 Sobic001G423100--Sobic006G279800 Sobic010G258300 Sobic010G258300 Sobic001G423100--Sobic010G258300 Sobic001G423100--Sobic003G030400 Sobic001G078200--Sobic001G191200 Sobic001G078200--Sobic005G085200 Sobic001G078200--Sobic010G057300 Sobic004G285800 Sobic004G285800 Sobic001G078200--Sobic004G285800 Sobic001G078200--Sobic005G085600 Sobic001G078200--Sobic001G423100 Sobic001G078200--Sobic003G406700 Sobic009G159700 Sobic009G159700 Sobic001G078200--Sobic009G159700 Sobic001G078200--Sobic009G213400
Octagon: transcription factors


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