Gene annotation
Transcriptome id Sobic.001G169200.1
Synonym lateral organ boundaries, Sb01g014800, SbLBD4, SbLBD4;lateral organ boundaries, LBD37, ASL39
Functional annotation "domain confirmed by Pfam database, expression induced by BR treatment" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt A0A1B6QJG1
Pfam PF03195
Panther DB PTHR31304 PTHR31304:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G67420 : LOB domain-containing protein 37
RAP-DB (Rice) LOC_Os03g41330.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007419 , Zm00025a048595 , Zm00025a002995
Brachypodium KQK15457 , KQK14217
Barley HORVU4Hr1G013380.1 , HORVU4Hr1G013380.3 , HORVU4Hr1G013380.2 , HORVU4Hr1G013380.5 , HORVU4Hr1G013380.4 , HORVU4Hr1G013380.6
Wheat TraesCS4A02G236200 , TraesCS4D02G077600 , TraesCS4B02G078800
Populus -


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cDNA sequences
Sobic.001G169200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G163700 Glutaredoxin family protein (Os)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
2 Sobic.003G163500 Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.005G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ANTH domain containing protein, expressed -
4 Sobic.005G111200 PB1 domain containing protein, expressed -
5 Sobic.009G171300 PX domain containing protein, expressed -
6 Sobic.010G214600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloride transporter, chloride channel family, putative, expressed K05016: chloride channel 7
7 Sobic.001G066600 mTERF domain containing protein, expressed -
8 Sobic.008G117300 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C12 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
9 Sobic.005G099700 expressed protein -
10 Sobic.005G204000 OsGrx_C17 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
11 Sobic.004G071750 - -
12 Sobic.004G144700 ABC transporter family protein, putative, expressed -
13 Sobic.010G194001 - -
14 Sobic.010G189300 Chorophyll a/b binding protein 8(PubMedID : 26186930)@photosystem I light harvesting complex gene 3(PubMedID : 26465154)@chlorophyll A-B binding protein, putative, expressed K08909: light-harvesting complex I chlorophyll a/b binding protein 3
15 Sobic.010G128000 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
16 Sobic.001G435500 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed -
17 Sobic.005G203900 OsGrx_C17 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.008G015100 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
19 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -
20 Sobic.001G160700 integral membrane protein DUF6 containing protein, expressed -


Gene co-expression network
sample Sobic001G169200 Sobic001G169200 Sobic003G163700 Sobic003G163700 Sobic001G169200--Sobic003G163700 Sobic003G163500 Sobic003G163500 Sobic001G169200--Sobic003G163500 Sobic005G086300 Sobic005G086300 Sobic001G169200--Sobic005G086300 Sobic005G111200 Sobic005G111200 Sobic001G169200--Sobic005G111200 Sobic009G171300 Sobic009G171300 Sobic001G169200--Sobic009G171300 Sobic010G214600 Sobic010G214600 Sobic001G169200--Sobic010G214600 Sobic001G066600 Sobic001G066600 Sobic001G169200--Sobic001G066600 Sobic008G117300 Sobic008G117300 Sobic001G169200--Sobic008G117300 Sobic005G099700 Sobic005G099700 Sobic001G169200--Sobic005G099700 Sobic003G163700--Sobic005G099700 Sobic001G435500 Sobic001G435500 Sobic003G163700--Sobic001G435500 Sobic003G163700--Sobic005G111200 Sobic003G163700--Sobic008G117300 Sobic008G015100 Sobic008G015100 Sobic003G163700--Sobic008G015100 Sobic003G163700--Sobic009G171300 Sobic004G272600 Sobic004G272600 Sobic003G163700--Sobic004G272600 Sobic003G163700--Sobic001G066600 Sobic005G204000 Sobic005G204000 Sobic003G163700--Sobic005G204000 Sobic003G178700 Sobic003G178700 Sobic003G163500--Sobic003G178700 Sobic003G163500--Sobic001G169200 Sobic003G163500--Sobic003G163700 Sobic009G010700 Sobic009G010700 Sobic003G163500--Sobic009G010700 Sobic003G163500--Sobic010G214600 Sobic010G194001 Sobic010G194001 Sobic003G163500--Sobic010G194001 Sobic003G163500--Sobic005G111200 Sobic010G248301 Sobic010G248301 Sobic003G163500--Sobic010G248301 Sobic010G246600 Sobic010G246600 Sobic003G163500--Sobic010G246600 Sobic005G086300--Sobic001G169200 Sobic009G110200 Sobic009G110200 Sobic005G086300--Sobic009G110200 Sobic009G049850 Sobic009G049850 Sobic005G086300--Sobic009G049850 Sobic006G026800 Sobic006G026800 Sobic005G086300--Sobic006G026800 Sobic010G179800 Sobic010G179800 Sobic005G086300--Sobic010G179800 Sobic004G071750 Sobic004G071750 Sobic005G086300--Sobic004G071750 Sobic001G160700 Sobic001G160700 Sobic005G086300--Sobic001G160700 Sobic005G111200--Sobic003G163700 Sobic005G111200--Sobic008G015100 Sobic001G463200 Sobic001G463200 Sobic005G111200--Sobic001G463200 Sobic005G111200--Sobic004G272600 Sobic010G164200 Sobic010G164200 Sobic005G111200--Sobic010G164200 Sobic005G111200--Sobic009G171300 Sobic008G016250 Sobic008G016250 Sobic005G111200--Sobic008G016250 Sobic001G425400 Sobic001G425400 Sobic005G111200--Sobic001G425400 Sobic005G111200--Sobic005G099700 Sobic009G171300--Sobic005G099700 Sobic009G171300--Sobic003G163700 Sobic009G171300--Sobic008G015100 Sobic009G171300--Sobic004G272600 Sobic009G171300--Sobic005G111200 Sobic010G189300 Sobic010G189300 Sobic009G171300--Sobic010G189300 Sobic009G171300--Sobic001G066600 Sobic009G171300--Sobic001G463200 Sobic008G101400 Sobic008G101400 Sobic009G171300--Sobic008G101400 Sobic010G214600--Sobic001G169200 Sobic010G214600--Sobic003G163500 Sobic001G217700 Sobic001G217700 Sobic010G214600--Sobic001G217700 Sobic008G118000 Sobic008G118000 Sobic010G214600--Sobic008G118000 Sobic010G214600--Sobic003G178700 Sobic001G291200 Sobic001G291200 Sobic010G214600--Sobic001G291200 Sobic008G060150 Sobic008G060150 Sobic010G214600--Sobic008G060150 Sobic002G376700 Sobic002G376700 Sobic010G214600--Sobic002G376700 Sobic007G130100 Sobic007G130100 Sobic010G214600--Sobic007G130100 Sobic009G229700 Sobic009G229700 Sobic001G066600--Sobic009G229700 Sobic009G165200 Sobic009G165200 Sobic001G066600--Sobic009G165200 Sobic001G066600--Sobic010G189300 Sobic002G033900 Sobic002G033900 Sobic001G066600--Sobic002G033900 Sobic001G066600--Sobic008G117300 Sobic005G152600 Sobic005G152600 Sobic001G066600--Sobic005G152600 Sobic001G070500 Sobic001G070500 Sobic001G066600--Sobic001G070500 Sobic006G073500 Sobic006G073500 Sobic001G066600--Sobic006G073500 Sobic002G352100 Sobic002G352100 Sobic001G066600--Sobic002G352100 Sobic008G117300--Sobic005G204000 Sobic008G117300--Sobic004G071750 Sobic008G117300--Sobic001G066600 Sobic005G203900 Sobic005G203900 Sobic008G117300--Sobic005G203900 Sobic001G260850 Sobic001G260850 Sobic008G117300--Sobic001G260850 Sobic007G221400 Sobic007G221400 Sobic008G117300--Sobic007G221400 Sobic008G117300--Sobic009G165200 Sobic002G048501 Sobic002G048501 Sobic008G117300--Sobic002G048501 Sobic008G117300--Sobic003G163700 Sobic005G099700--Sobic001G435500 Sobic005G099700--Sobic001G070500 Sobic005G099700--Sobic010G189300 Sobic005G099700--Sobic003G163700 Sobic005G099700--Sobic004G272600 Sobic005G099700--Sobic002G033900 Sobic005G099700--Sobic001G066600 Sobic005G099700--Sobic006G073500 Sobic005G099700--Sobic009G229700
Octagon: transcription factors


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