Gene annotation
Transcriptome id Sobic.010G214600.1
Synonym ATCLC-A, Sb10g026090, ATCLCA, CLCA, CLC-A
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
chloride transporter, chloride channel family, putative, expressed
UniProt C5Z779
Pfam PF00654
Panther DB PTHR11689 PTHR11689:SF67
NCBI CDD -
KEGG Orthology K05016; chloride channel 7
Gene Ontology GO:0016020; membrane GO:0006821chloride transport GO:0005247voltage-gated chloride channel activity


Orthologs (automatic annotation)
TAIR AT5G40890 : chloride channel A
RAP-DB (Rice) LOC_Os12g25200.1 : chloride transporter, chloride channel family, putative, expressed
MaizeGDB (Corn) Zm00025a051703
Brachypodium KQK13684 , KQK13683 , KQJ86813
Barley HORVU6Hr1G017920.11 , HORVU6Hr1G017920.10 , HORVU6Hr1G017920.9 , HORVU6Hr1G017920.8 , HORVU0Hr1G015220.1 , HORVU0Hr1G015220.2 , HORVU0Hr1G015220.3 , HORVU5Hr1G107380.2 , HORVU5Hr1G107380.3 , HORVU5Hr1G107380.1 , HORVU6Hr1G017920.7
Wheat TraesCS6A02G098500 , TraesCS6A02G098500 , TraesCS6A02G098600 , TraesCS6D02G084000 , TraesCS5D02G456000 , TraesCS6D02G084300 , TraesCS5B02G457100 , TraesCS6B02G126400 , TraesCS6B02G126800 , TraesCS5A02G449500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G169200 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
2 Sobic.003G163500 Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
3 Sobic.001G217700 possible lysine decarboxylase domain containing protein, expressed -
4 Sobic.008G118000 Glutaredoxin family protein (At)(PubMedID : 27208977)@OsGrx_C11 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
5 Sobic.003G178700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
6 Sobic.001G291200 - -
7 Sobic.008G060150 - -
8 Sobic.002G376700 EF hand family protein, putative -
9 Sobic.007G130100 armadillo/beta-catenin repeat family protein, putative, expressed -
10 Sobic.010G248301 - K00499: choline monooxygenase
11 Sobic.004G315800 ZOS2-17 - C2H2 zinc finger protein, expressed -
12 Sobic.007G179750 - -
13 Sobic.004G001300 -(PubMedID : 26976818)@erythronate-4-phosphate dehydrogenase domain containing protein, expressed K15893: glycerate dehydrogenase
14 Sobic.006G214400 peptidase, trypsin-like serine and cysteine proteases, putative, expressed -
15 Sobic.009G010700 expressed protein -
16 Sobic.010G246600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed -
17 Sobic.001G053900 nodulin, putative, expressed -
18 Sobic.001G275200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
20 Sobic.002G215000 chlorophyll A-B binding protein, putative, expressed K08908: light-harvesting complex I chlorophyll a/b binding protein 2


Gene co-expression network
sample Sobic010G214600 Sobic010G214600 Sobic001G169200 Sobic001G169200 Sobic010G214600--Sobic001G169200 Sobic003G163500 Sobic003G163500 Sobic010G214600--Sobic003G163500 Sobic001G217700 Sobic001G217700 Sobic010G214600--Sobic001G217700 Sobic008G118000 Sobic008G118000 Sobic010G214600--Sobic008G118000 Sobic003G178700 Sobic003G178700 Sobic010G214600--Sobic003G178700 Sobic001G291200 Sobic001G291200 Sobic010G214600--Sobic001G291200 Sobic008G060150 Sobic008G060150 Sobic010G214600--Sobic008G060150 Sobic002G376700 Sobic002G376700 Sobic010G214600--Sobic002G376700 Sobic007G130100 Sobic007G130100 Sobic010G214600--Sobic007G130100 Sobic003G163700 Sobic003G163700 Sobic001G169200--Sobic003G163700 Sobic001G169200--Sobic003G163500 Sobic005G086300 Sobic005G086300 Sobic001G169200--Sobic005G086300 Sobic005G111200 Sobic005G111200 Sobic001G169200--Sobic005G111200 Sobic009G171300 Sobic009G171300 Sobic001G169200--Sobic009G171300 Sobic001G169200--Sobic010G214600 Sobic001G066600 Sobic001G066600 Sobic001G169200--Sobic001G066600 Sobic008G117300 Sobic008G117300 Sobic001G169200--Sobic008G117300 Sobic005G099700 Sobic005G099700 Sobic001G169200--Sobic005G099700 Sobic003G163500--Sobic003G178700 Sobic003G163500--Sobic001G169200 Sobic003G163500--Sobic003G163700 Sobic009G010700 Sobic009G010700 Sobic003G163500--Sobic009G010700 Sobic003G163500--Sobic010G214600 Sobic010G194001 Sobic010G194001 Sobic003G163500--Sobic010G194001 Sobic003G163500--Sobic005G111200 Sobic010G248301 Sobic010G248301 Sobic003G163500--Sobic010G248301 Sobic010G246600 Sobic010G246600 Sobic003G163500--Sobic010G246600 Sobic006G060200 Sobic006G060200 Sobic001G217700--Sobic006G060200 Sobic002G104000 Sobic002G104000 Sobic001G217700--Sobic002G104000 Sobic006G249050 Sobic006G249050 Sobic001G217700--Sobic006G249050 Sobic001G217700--Sobic002G376700 Sobic003G110700 Sobic003G110700 Sobic001G217700--Sobic003G110700 Sobic001G269300 Sobic001G269300 Sobic001G217700--Sobic001G269300 Sobic006G102400 Sobic006G102400 Sobic001G217700--Sobic006G102400 Sobic005G036600 Sobic005G036600 Sobic001G217700--Sobic005G036600 Sobic001G217700--Sobic010G246600 Sobic006G214400 Sobic006G214400 Sobic008G118000--Sobic006G214400 Sobic008G101500 Sobic008G101500 Sobic008G118000--Sobic008G101500 Sobic008G118000--Sobic003G178700 Sobic001G491200 Sobic001G491200 Sobic008G118000--Sobic001G491200 Sobic008G118000--Sobic001G217700 Sobic002G114700 Sobic002G114700 Sobic008G118000--Sobic002G114700 Sobic007G076700 Sobic007G076700 Sobic008G118000--Sobic007G076700 Sobic009G085400 Sobic009G085400 Sobic008G118000--Sobic009G085400 Sobic004G315800 Sobic004G315800 Sobic008G118000--Sobic004G315800 Sobic008G015300 Sobic008G015300 Sobic003G178700--Sobic008G015300 Sobic003G178700--Sobic003G163500 Sobic005G046500 Sobic005G046500 Sobic003G178700--Sobic005G046500 Sobic009G002500 Sobic009G002500 Sobic003G178700--Sobic009G002500 Sobic003G178700--Sobic008G101500 Sobic003G178700--Sobic008G118000 Sobic005G076000 Sobic005G076000 Sobic003G178700--Sobic005G076000 Sobic007G129100 Sobic007G129100 Sobic003G178700--Sobic007G129100 Sobic009G213400 Sobic009G213400 Sobic003G178700--Sobic009G213400 Sobic001G053900 Sobic001G053900 Sobic001G291200--Sobic001G053900 Sobic001G240800 Sobic001G240800 Sobic001G291200--Sobic001G240800 Sobic006G053700 Sobic006G053700 Sobic001G291200--Sobic006G053700 Sobic001G291200--Sobic002G376700 Sobic004G096300 Sobic004G096300 Sobic001G291200--Sobic004G096300 Sobic003G284300 Sobic003G284300 Sobic001G291200--Sobic003G284300 Sobic003G108600 Sobic003G108600 Sobic001G291200--Sobic003G108600 Sobic003G391100 Sobic003G391100 Sobic001G291200--Sobic003G391100 Sobic001G291200--Sobic010G214600 Sobic004G144700 Sobic004G144700 Sobic008G060150--Sobic004G144700 Sobic002G215000 Sobic002G215000 Sobic008G060150--Sobic002G215000 Sobic001G201966 Sobic001G201966 Sobic008G060150--Sobic001G201966 Sobic008G105900 Sobic008G105900 Sobic008G060150--Sobic008G105900 Sobic003G074700 Sobic003G074700 Sobic008G060150--Sobic003G074700 Sobic003G114100 Sobic003G114100 Sobic008G060150--Sobic003G114100 Sobic008G060150--Sobic009G010700 Sobic008G131700 Sobic008G131700 Sobic008G060150--Sobic008G131700 Sobic005G063700 Sobic005G063700 Sobic008G060150--Sobic005G063700 Sobic002G376700--Sobic001G217700 Sobic002G376700--Sobic001G053900 Sobic005G002600 Sobic005G002600 Sobic002G376700--Sobic005G002600 Sobic001G465100 Sobic001G465100 Sobic002G376700--Sobic001G465100 Sobic003G320600 Sobic003G320600 Sobic002G376700--Sobic003G320600 Sobic010G214000 Sobic010G214000 Sobic002G376700--Sobic010G214000 Sobic002G376700--Sobic010G246600 Sobic004G113800 Sobic004G113800 Sobic002G376700--Sobic004G113800 Sobic002G376700--Sobic001G291200 Sobic004G020401 Sobic004G020401 Sobic007G130100--Sobic004G020401 Sobic007G130100--Sobic004G315800 Sobic004G291800 Sobic004G291800 Sobic007G130100--Sobic004G291800 Sobic003G324000 Sobic003G324000 Sobic007G130100--Sobic003G324000 Sobic010G280100 Sobic010G280100 Sobic007G130100--Sobic010G280100 Sobic009G198900 Sobic009G198900 Sobic007G130100--Sobic009G198900 Sobic003G057800 Sobic003G057800 Sobic007G130100--Sobic003G057800 Sobic006G048775 Sobic006G048775 Sobic007G130100--Sobic006G048775 Sobic009G110366 Sobic009G110366 Sobic007G130100--Sobic009G110366
Octagon: transcription factors


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