Gene annotation
Transcriptome id Sobic.010G248301.1
Synonym -
Functional annotation -
UniProt A0A1W0VUP4
Pfam PF00355 PF00848
Panther DB PTHR21266 PTHR21266:SF2
NCBI CDD -
KEGG Orthology K00499; choline monooxygenase
Gene Ontology GO:0016491; oxidoreductase activity GO:0016708oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor GO:0005506iron ion binding


Orthologs (automatic annotation)
TAIR AT4G29890 : choline monooxygenase, putative (CMO-like)
RAP-DB (Rice) LOC_Os06g48510.1 : choline monooxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a041793
Brachypodium KQK17360 , KQK17361 , KQK17362 , PNT75517 , PNT75518 , KQK17359
Barley HORVU7Hr1G097970.14 , HORVU7Hr1G097970.18 , HORVU7Hr1G097970.15 , HORVU7Hr1G097970.17 , HORVU7Hr1G097970.36 , HORVU7Hr1G097970.35 , HORVU7Hr1G097970.34 , HORVU7Hr1G097970.33 , HORVU7Hr1G097970.32 , HORVU7Hr1G097970.31 , HORVU7Hr1G097970.30 , HORVU7Hr1G097970.24 , HORVU7Hr1G097970.25 , HORVU7Hr1G097970.26 , HORVU7Hr1G097970.27 , HORVU7Hr1G097970.20 , HORVU7Hr1G097970.21 , HORVU7Hr1G097970.22 , HORVU7Hr1G097970.23 , HORVU7Hr1G097970.28 , HORVU7Hr1G097970.29 , HORVU7Hr1G097970.19 , HORVU7Hr1G097970.11 , HORVU7Hr1G097970.10 , HORVU7Hr1G097970.13 , HORVU7Hr1G097970.12 , HORVU7Hr1G097970.16 , HORVU7Hr1G097970.9 , HORVU7Hr1G097970.8 , HORVU7Hr1G097970.5 , HORVU7Hr1G097970.4 , HORVU7Hr1G097970.7 , HORVU7Hr1G097970.6 , HORVU7Hr1G097970.3 , HORVU7Hr1G097970.2
Wheat TraesCS7D02G416700 , TraesCS7A02G425000 , TraesCS7B02G324900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G163500 Electron carrierprotein disulfide oxidoreductase (At)(PubMedID : 27208977)@expressed protein K03676: grxC, GLRX, glutaredoxin 3
2 Sobic.010G245100 lectin-like receptor kinase 1, putative, expressed -
3 Sobic.010G214600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@chloride transporter, chloride channel family, putative, expressed K05016: chloride channel 7
4 Sobic.001G261541 - -
5 Sobic.009G171300 PX domain containing protein, expressed -
6 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
7 Sobic.005G063700 OsFBW2 - F-box domain and WD40 repeat containing protein, expressed -
8 Sobic.001G497200 expressed protein -
9 Sobic.004G144700 ABC transporter family protein, putative, expressed -
10 Sobic.008G001000 AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
11 Sobic.004G113800 CAPIP1, putative, expressed K14496: abscisic acid receptor PYR/PYL family
12 Sobic.007G182200 - -
13 Sobic.003G178700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
14 Sobic.004G097500 - -
15 Sobic.005G055900 expressed protein -
16 Sobic.006G048775 - -
17 Sobic.003G174450 - -
18 Sobic.001G261496 - -
19 Sobic.003G149300 pentatricopeptide, putative, expressed -
20 Sobic.002G354501 - -


Gene co-expression network
sample Sobic010G248301 Sobic010G248301 Sobic003G163500 Sobic003G163500 Sobic010G248301--Sobic003G163500 Sobic010G245100 Sobic010G245100 Sobic010G248301--Sobic010G245100 Sobic010G214600 Sobic010G214600 Sobic010G248301--Sobic010G214600 Sobic001G261541 Sobic001G261541 Sobic010G248301--Sobic001G261541 Sobic009G171300 Sobic009G171300 Sobic010G248301--Sobic009G171300 Sobic001G118100 Sobic001G118100 Sobic010G248301--Sobic001G118100 Sobic005G063700 Sobic005G063700 Sobic010G248301--Sobic005G063700 Sobic001G497200 Sobic001G497200 Sobic010G248301--Sobic001G497200 Sobic004G144700 Sobic004G144700 Sobic010G248301--Sobic004G144700 Sobic003G178700 Sobic003G178700 Sobic003G163500--Sobic003G178700 Sobic001G169200 Sobic001G169200 Sobic003G163500--Sobic001G169200 Sobic003G163700 Sobic003G163700 Sobic003G163500--Sobic003G163700 Sobic009G010700 Sobic009G010700 Sobic003G163500--Sobic009G010700 Sobic003G163500--Sobic010G214600 Sobic010G194001 Sobic010G194001 Sobic003G163500--Sobic010G194001 Sobic005G111200 Sobic005G111200 Sobic003G163500--Sobic005G111200 Sobic003G163500--Sobic010G248301 Sobic010G246600 Sobic010G246600 Sobic003G163500--Sobic010G246600 Sobic009G213400 Sobic009G213400 Sobic010G245100--Sobic009G213400 Sobic006G273000 Sobic006G273000 Sobic010G245100--Sobic006G273000 Sobic003G222300 Sobic003G222300 Sobic010G245100--Sobic003G222300 Sobic003G284300 Sobic003G284300 Sobic010G245100--Sobic003G284300 Sobic001G275200 Sobic001G275200 Sobic010G245100--Sobic001G275200 Sobic001G005500 Sobic001G005500 Sobic010G245100--Sobic001G005500 Sobic010G052500 Sobic010G052500 Sobic010G245100--Sobic010G052500 Sobic005G055900 Sobic005G055900 Sobic010G245100--Sobic005G055900 Sobic001G093600 Sobic001G093600 Sobic010G245100--Sobic001G093600 Sobic010G214600--Sobic001G169200 Sobic010G214600--Sobic003G163500 Sobic001G217700 Sobic001G217700 Sobic010G214600--Sobic001G217700 Sobic008G118000 Sobic008G118000 Sobic010G214600--Sobic008G118000 Sobic010G214600--Sobic003G178700 Sobic001G291200 Sobic001G291200 Sobic010G214600--Sobic001G291200 Sobic008G060150 Sobic008G060150 Sobic010G214600--Sobic008G060150 Sobic002G376700 Sobic002G376700 Sobic010G214600--Sobic002G376700 Sobic007G130100 Sobic007G130100 Sobic010G214600--Sobic007G130100 Sobic003G179201 Sobic003G179201 Sobic001G261541--Sobic003G179201 Sobic002G144933 Sobic002G144933 Sobic001G261541--Sobic002G144933 Sobic010G232400 Sobic010G232400 Sobic001G261541--Sobic010G232400 Sobic004G082400 Sobic004G082400 Sobic001G261541--Sobic004G082400 Sobic010G136600 Sobic010G136600 Sobic001G261541--Sobic010G136600 Sobic010G202000 Sobic010G202000 Sobic001G261541--Sobic010G202000 Sobic010G028800 Sobic010G028800 Sobic001G261541--Sobic010G028800 Sobic001G261496 Sobic001G261496 Sobic001G261541--Sobic001G261496 Sobic006G222300 Sobic006G222300 Sobic001G261541--Sobic006G222300 Sobic005G099700 Sobic005G099700 Sobic009G171300--Sobic005G099700 Sobic009G171300--Sobic003G163700 Sobic008G015100 Sobic008G015100 Sobic009G171300--Sobic008G015100 Sobic004G272600 Sobic004G272600 Sobic009G171300--Sobic004G272600 Sobic009G171300--Sobic005G111200 Sobic010G189300 Sobic010G189300 Sobic009G171300--Sobic010G189300 Sobic001G066600 Sobic001G066600 Sobic009G171300--Sobic001G066600 Sobic001G463200 Sobic001G463200 Sobic009G171300--Sobic001G463200 Sobic008G101400 Sobic008G101400 Sobic009G171300--Sobic008G101400 Sobic004G001300 Sobic004G001300 Sobic001G118100--Sobic004G001300 Sobic006G225200 Sobic006G225200 Sobic001G118100--Sobic006G225200 Sobic005G036600 Sobic005G036600 Sobic001G118100--Sobic005G036600 Sobic009G140500 Sobic009G140500 Sobic001G118100--Sobic009G140500 Sobic004G113800 Sobic004G113800 Sobic001G118100--Sobic004G113800 Sobic001G484800 Sobic001G484800 Sobic001G118100--Sobic001G484800 Sobic002G291700 Sobic002G291700 Sobic001G118100--Sobic002G291700 Sobic007G052900 Sobic007G052900 Sobic001G118100--Sobic007G052900 Sobic004G065650 Sobic004G065650 Sobic001G118100--Sobic004G065650 Sobic005G063700--Sobic007G052900 Sobic002G209600 Sobic002G209600 Sobic005G063700--Sobic002G209600 Sobic005G063700--Sobic001G497200 Sobic007G225800 Sobic007G225800 Sobic005G063700--Sobic007G225800 Sobic008G105900 Sobic008G105900 Sobic005G063700--Sobic008G105900 Sobic003G390400 Sobic003G390400 Sobic005G063700--Sobic003G390400 Sobic006G060200 Sobic006G060200 Sobic005G063700--Sobic006G060200 Sobic001G269300 Sobic001G269300 Sobic005G063700--Sobic001G269300 Sobic002G000700 Sobic002G000700 Sobic005G063700--Sobic002G000700 Sobic005G001800 Sobic005G001800 Sobic001G497200--Sobic005G001800 Sobic001G497200--Sobic010G202000 Sobic006G180432 Sobic006G180432 Sobic001G497200--Sobic006G180432 Sobic007G054000 Sobic007G054000 Sobic001G497200--Sobic007G054000 Sobic001G497200--Sobic007G052900 Sobic006G046000 Sobic006G046000 Sobic001G497200--Sobic006G046000 Sobic001G162300 Sobic001G162300 Sobic001G497200--Sobic001G162300 Sobic010G056200 Sobic010G056200 Sobic001G497200--Sobic010G056200 Sobic006G048775 Sobic006G048775 Sobic001G497200--Sobic006G048775 Sobic004G144700--Sobic008G015100 Sobic004G144700--Sobic005G055900 Sobic004G144700--Sobic008G060150 Sobic004G144700--Sobic003G163700 Sobic004G144700--Sobic001G066600 Sobic004G144700--Sobic009G171300 Sobic001G435500 Sobic001G435500 Sobic004G144700--Sobic001G435500 Sobic004G144700--Sobic010G189300 Sobic003G088800 Sobic003G088800 Sobic004G144700--Sobic003G088800
Octagon: transcription factors


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