Gene annotation
Transcriptome id Sobic.005G063700.3,Sobic.005G063700.2,Sobic.005G063700.4
Synonym Sb05g005350
Functional annotation OsFBW2 - F-box domain and WD40 repeat containing protein, expressed
UniProt A0A1B6PQI1 , A0A1Z5RH11 , A0A1Z5RHW4
Pfam PF12937
Panther DB PTHR22844 PTHR22844:SF149
NCBI CDD KOG0296; Angio-associated migratory cell protein (contains WD40 repeats)
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G52030 : F-box family protein with WD40/YVTN repeat doamin
RAP-DB (Rice) LOC_Os11g07970.1 : OsFBW2 - F-box domain and WD40 repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a012789
Brachypodium PNT64037 , PNT64036 , KQJ89134
Barley HORVU4Hr1G018020.4 , HORVU4Hr1G018020.1 , HORVU4Hr1G018020.3 , HORVU4Hr1G018020.2
Wheat TraesCS4B02G097400 , TraesCS4D02G093800 , TraesCS4A02G218600
Populus -


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cDNA sequences
Sobic.005G063700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G052900 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.002G209600 CBS domain containing protein, expressed -
3 Sobic.001G497200 expressed protein -
4 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
5 Sobic.008G105900 - -
6 Sobic.003G390400 expressed protein -
7 Sobic.006G060200 basic proline-rich protein, putative, expressed -
8 Sobic.001G269300 OsFBD15 - F-box and FBD domain containing protein, expressed -
9 Sobic.002G000700 expressed protein -
10 Sobic.010G068400 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12896: splicing factor, arginine/serine-rich 7
11 Sobic.008G092532 - -
12 Sobic.009G191100 expressed protein -
13 Sobic.006G180432 - -
14 Sobic.003G124700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@PQ loop repeat domain containing protein, expressed -
15 Sobic.003G137100 protoporphyrinogen oxidase, chloroplast precursor, putative, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
16 Sobic.005G001800 - -
17 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
18 Sobic.003G201750 - -
19 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
20 Sobic.001G118100 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic005G063700 Sobic005G063700 Sobic007G052900 Sobic007G052900 Sobic005G063700--Sobic007G052900 Sobic002G209600 Sobic002G209600 Sobic005G063700--Sobic002G209600 Sobic001G497200 Sobic001G497200 Sobic005G063700--Sobic001G497200 Sobic007G225800 Sobic007G225800 Sobic005G063700--Sobic007G225800 Sobic008G105900 Sobic008G105900 Sobic005G063700--Sobic008G105900 Sobic003G390400 Sobic003G390400 Sobic005G063700--Sobic003G390400 Sobic006G060200 Sobic006G060200 Sobic005G063700--Sobic006G060200 Sobic001G269300 Sobic001G269300 Sobic005G063700--Sobic001G269300 Sobic002G000700 Sobic002G000700 Sobic005G063700--Sobic002G000700 Sobic010G056200 Sobic010G056200 Sobic007G052900--Sobic010G056200 Sobic004G113800 Sobic004G113800 Sobic007G052900--Sobic004G113800 Sobic007G052900--Sobic002G209600 Sobic010G005600 Sobic010G005600 Sobic007G052900--Sobic010G005600 Sobic004G083700 Sobic004G083700 Sobic007G052900--Sobic004G083700 Sobic007G054000 Sobic007G054000 Sobic007G052900--Sobic007G054000 Sobic010G280100 Sobic010G280100 Sobic007G052900--Sobic010G280100 Sobic006G180432 Sobic006G180432 Sobic007G052900--Sobic006G180432 Sobic009G065100 Sobic009G065100 Sobic007G052900--Sobic009G065100 Sobic004G246800 Sobic004G246800 Sobic002G209600--Sobic004G246800 Sobic002G209600--Sobic007G052900 Sobic006G191400 Sobic006G191400 Sobic002G209600--Sobic006G191400 Sobic002G209600--Sobic001G269300 Sobic009G251300 Sobic009G251300 Sobic002G209600--Sobic009G251300 Sobic002G209600--Sobic005G063700 Sobic008G131700 Sobic008G131700 Sobic002G209600--Sobic008G131700 Sobic007G076700 Sobic007G076700 Sobic002G209600--Sobic007G076700 Sobic002G330400 Sobic002G330400 Sobic002G209600--Sobic002G330400 Sobic005G001800 Sobic005G001800 Sobic001G497200--Sobic005G001800 Sobic010G202000 Sobic010G202000 Sobic001G497200--Sobic010G202000 Sobic001G497200--Sobic006G180432 Sobic001G497200--Sobic007G054000 Sobic001G497200--Sobic007G052900 Sobic006G046000 Sobic006G046000 Sobic001G497200--Sobic006G046000 Sobic001G162300 Sobic001G162300 Sobic001G497200--Sobic001G162300 Sobic001G497200--Sobic010G056200 Sobic006G048775 Sobic006G048775 Sobic001G497200--Sobic006G048775 Sobic008G092532 Sobic008G092532 Sobic007G225800--Sobic008G092532 Sobic007G225800--Sobic003G390400 Sobic002G346600 Sobic002G346600 Sobic007G225800--Sobic002G346600 Sobic006G063001 Sobic006G063001 Sobic007G225800--Sobic006G063001 Sobic007G225800--Sobic005G063700 Sobic002G228700 Sobic002G228700 Sobic007G225800--Sobic002G228700 Sobic002G402600 Sobic002G402600 Sobic007G225800--Sobic002G402600 Sobic009G191100 Sobic009G191100 Sobic007G225800--Sobic009G191100 Sobic003G163100 Sobic003G163100 Sobic007G225800--Sobic003G163100 Sobic008G105900--Sobic005G063700 Sobic007G130100 Sobic007G130100 Sobic008G105900--Sobic007G130100 Sobic008G105900--Sobic001G269300 Sobic008G105900--Sobic006G180432 Sobic002G420300 Sobic002G420300 Sobic008G105900--Sobic002G420300 Sobic008G105900--Sobic001G497200 Sobic008G105900--Sobic006G048775 Sobic008G105900--Sobic007G052900 Sobic004G315800 Sobic004G315800 Sobic008G105900--Sobic004G315800 Sobic005G110472 Sobic005G110472 Sobic003G390400--Sobic005G110472 Sobic003G170100 Sobic003G170100 Sobic003G390400--Sobic003G170100 Sobic010G129200 Sobic010G129200 Sobic003G390400--Sobic010G129200 Sobic007G137900 Sobic007G137900 Sobic003G390400--Sobic007G137900 Sobic001G251700 Sobic001G251700 Sobic003G390400--Sobic001G251700 Sobic002G157000 Sobic002G157000 Sobic003G390400--Sobic002G157000 Sobic008G192500 Sobic008G192500 Sobic003G390400--Sobic008G192500 Sobic002G144933 Sobic002G144933 Sobic003G390400--Sobic002G144933 Sobic001G407200 Sobic001G407200 Sobic003G390400--Sobic001G407200 Sobic006G060200--Sobic001G269300 Sobic002G215000 Sobic002G215000 Sobic006G060200--Sobic002G215000 Sobic001G217700 Sobic001G217700 Sobic006G060200--Sobic001G217700 Sobic006G060200--Sobic008G131700 Sobic001G233400 Sobic001G233400 Sobic006G060200--Sobic001G233400 Sobic005G036600 Sobic005G036600 Sobic006G060200--Sobic005G036600 Sobic003G137100 Sobic003G137100 Sobic006G060200--Sobic003G137100 Sobic001G495300 Sobic001G495300 Sobic006G060200--Sobic001G495300 Sobic005G084000 Sobic005G084000 Sobic006G060200--Sobic005G084000 Sobic001G269300--Sobic006G060200 Sobic001G269300--Sobic006G180432 Sobic001G269300--Sobic005G036600 Sobic001G269300--Sobic002G209600 Sobic003G201750 Sobic003G201750 Sobic001G269300--Sobic003G201750 Sobic001G269300--Sobic007G052900 Sobic004G143400 Sobic004G143400 Sobic001G269300--Sobic004G143400 Sobic001G269300--Sobic008G131700 Sobic001G269300--Sobic004G315800 Sobic002G000700--Sobic003G137100 Sobic002G358500 Sobic002G358500 Sobic002G000700--Sobic002G358500 Sobic007G213700 Sobic007G213700 Sobic002G000700--Sobic007G213700 Sobic004G001300 Sobic004G001300 Sobic002G000700--Sobic004G001300 Sobic006G249050 Sobic006G249050 Sobic002G000700--Sobic006G249050 Sobic001G060401 Sobic001G060401 Sobic002G000700--Sobic001G060401 Sobic007G204900 Sobic007G204900 Sobic002G000700--Sobic007G204900 Sobic010G164200 Sobic010G164200 Sobic002G000700--Sobic010G164200 Sobic007G150100 Sobic007G150100 Sobic002G000700--Sobic007G150100
Octagon: transcription factors


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