Gene annotation
Transcriptome id Sobic.010G068400.2,Sobic.010G068400.1
Synonym RSZP22, Sb10g005960, serine/arginine-rich (SR) family, SRZ-22, SRZ22, sb-RSZ21
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt M1H560 , M1HJ00 , C5Z5V6
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K12896; splicing factor, arginine/serine-rich 7
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G31580 : serine/arginine-rich 22
RAP-DB (Rice) LOC_Os06g08840.1,LOC_Os06g08840.5 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a022419 , Zm00025a049732
Brachypodium PNT76316 , KQK19211 , KQK19209
Barley HORVU7Hr1G031320.12 , HORVU7Hr1G031320.18 , HORVU7Hr1G031320.19 , HORVU7Hr1G031320.10 , HORVU7Hr1G031320.11 , HORVU7Hr1G031320.17 , HORVU7Hr1G031320.14 , HORVU7Hr1G031320.15 , HORVU7Hr1G031320.1 , HORVU7Hr1G031320.2 , HORVU7Hr1G031320.3 , HORVU7Hr1G031320.4 , HORVU7Hr1G031320.5 , HORVU7Hr1G031320.6 , HORVU7Hr1G031320.7 , HORVU7Hr1G031320.8 , HORVU7Hr1G031320.9 , HORVU7Hr1G031320.20 , HORVU7Hr1G031320.13 , HORVU7Hr1G031320.16
Wheat TraesCS7A02G152800 , TraesCS7B02G056600 , TraesCS7B02G056600 , TraesCS7B02G056600
Populus PNS92019 , PNT34024 , PNS92022 , PNS92023 , PNS92021


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cDNA sequences
Sobic.010G068400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G173950 - -
2 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
3 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
4 Sobic.009G102500 - -
5 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
6 Sobic.004G246700 zinc finger family protein, putative, expressed -
7 Sobic.002G144933 - -
8 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
9 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
10 Sobic.007G009400 bromodomain domain containing protein, expressed -
11 Sobic.001G261496 - -
12 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
13 Sobic.003G298100 one zinc finger protein, putative, expressed -
14 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
15 Sobic.007G054400 FAR1 family protein, expressed -
16 Sobic.005G063700 OsFBW2 - F-box domain and WD40 repeat containing protein, expressed -
17 Sobic.008G136200 spotted leaf 11, putative, expressed -
18 Sobic.003G108700 RNA recognition motif, putative, expressed -
19 Sobic.004G096500 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
20 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic010G068400 Sobic010G068400 Sobic003G173950 Sobic003G173950 Sobic010G068400--Sobic003G173950 Sobic003G197800 Sobic003G197800 Sobic010G068400--Sobic003G197800 Sobic001G356500 Sobic001G356500 Sobic010G068400--Sobic001G356500 Sobic009G102500 Sobic009G102500 Sobic010G068400--Sobic009G102500 Sobic002G186000 Sobic002G186000 Sobic010G068400--Sobic002G186000 Sobic004G246700 Sobic004G246700 Sobic010G068400--Sobic004G246700 Sobic002G144933 Sobic002G144933 Sobic010G068400--Sobic002G144933 Sobic002G157000 Sobic002G157000 Sobic010G068400--Sobic002G157000 Sobic009G065100 Sobic009G065100 Sobic010G068400--Sobic009G065100 Sobic003G173950--Sobic001G356500 Sobic003G241200 Sobic003G241200 Sobic003G173950--Sobic003G241200 Sobic003G173950--Sobic003G197800 Sobic002G320500 Sobic002G320500 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic004G084300 Sobic004G084300 Sobic003G173950--Sobic004G084300 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic003G197800--Sobic002G157000 Sobic003G197800--Sobic002G320500 Sobic003G197800--Sobic002G186000 Sobic002G151600 Sobic002G151600 Sobic003G197800--Sobic002G151600 Sobic006G133800 Sobic006G133800 Sobic003G197800--Sobic006G133800 Sobic003G197800--Sobic009G065100 Sobic003G197800--Sobic003G173950 Sobic002G248400 Sobic002G248400 Sobic003G197800--Sobic002G248400 Sobic003G197800--Sobic001G206100 Sobic001G356500--Sobic003G173950 Sobic001G356500--Sobic001G206100 Sobic001G356500--Sobic007G065400 Sobic002G264200 Sobic002G264200 Sobic001G356500--Sobic002G264200 Sobic001G356500--Sobic002G320500 Sobic003G170100 Sobic003G170100 Sobic001G356500--Sobic003G170100 Sobic002G121600 Sobic002G121600 Sobic001G356500--Sobic002G121600 Sobic001G257300 Sobic001G257300 Sobic001G356500--Sobic001G257300 Sobic002G161000 Sobic002G161000 Sobic001G356500--Sobic002G161000 Sobic009G102500--Sobic003G170100 Sobic009G102500--Sobic003G173950 Sobic009G102500--Sobic002G144933 Sobic007G096600 Sobic007G096600 Sobic009G102500--Sobic007G096600 Sobic009G102500--Sobic002G157000 Sobic008G173900 Sobic008G173900 Sobic009G102500--Sobic008G173900 Sobic001G152320 Sobic001G152320 Sobic009G102500--Sobic001G152320 Sobic003G200200 Sobic003G200200 Sobic009G102500--Sobic003G200200 Sobic009G102500--Sobic001G356500 Sobic002G186000--Sobic003G197800 Sobic002G186000--Sobic002G157000 Sobic002G186000--Sobic002G248400 Sobic001G094000 Sobic001G094000 Sobic002G186000--Sobic001G094000 Sobic002G186000--Sobic003G200200 Sobic007G011400 Sobic007G011400 Sobic002G186000--Sobic007G011400 Sobic002G058300 Sobic002G058300 Sobic002G186000--Sobic002G058300 Sobic001G162300 Sobic001G162300 Sobic002G186000--Sobic001G162300 Sobic003G220200 Sobic003G220200 Sobic002G186000--Sobic003G220200 Sobic004G349900 Sobic004G349900 Sobic004G246700--Sobic004G349900 Sobic002G365100 Sobic002G365100 Sobic004G246700--Sobic002G365100 Sobic002G259800 Sobic002G259800 Sobic004G246700--Sobic002G259800 Sobic008G127400 Sobic008G127400 Sobic004G246700--Sobic008G127400 Sobic004G246700--Sobic003G241200 Sobic010G202600 Sobic010G202600 Sobic004G246700--Sobic010G202600 Sobic004G096500 Sobic004G096500 Sobic004G246700--Sobic004G096500 Sobic004G246700--Sobic002G320500 Sobic002G034600 Sobic002G034600 Sobic004G246700--Sobic002G034600 Sobic002G144933--Sobic008G173900 Sobic002G144933--Sobic002G157000 Sobic001G420200 Sobic001G420200 Sobic002G144933--Sobic001G420200 Sobic003G268300 Sobic003G268300 Sobic002G144933--Sobic003G268300 Sobic001G274200 Sobic001G274200 Sobic002G144933--Sobic001G274200 Sobic007G037900 Sobic007G037900 Sobic002G144933--Sobic007G037900 Sobic004G145500 Sobic004G145500 Sobic002G144933--Sobic004G145500 Sobic002G144933--Sobic003G170100 Sobic002G144933--Sobic009G065100 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic002G157000--Sobic001G162300 Sobic003G108700 Sobic003G108700 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000 Sobic009G065100--Sobic002G320500 Sobic009G065100--Sobic002G157000 Sobic009G065100--Sobic008G173900 Sobic009G215800 Sobic009G215800 Sobic009G065100--Sobic009G215800 Sobic009G065100--Sobic004G084300 Sobic009G065100--Sobic002G144933 Sobic002G309800 Sobic002G309800 Sobic009G065100--Sobic002G309800 Sobic001G107500 Sobic001G107500 Sobic009G065100--Sobic001G107500 Sobic009G065100--Sobic003G197800
Octagon: transcription factors


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