Gene annotation
Transcriptome id Sobic.003G124700.2
Synonym Sb03g010545
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
PQ loop repeat domain containing protein, expressed
UniProt A0A1B6Q2U3
Pfam PF04193
Panther DB PTHR16201 PTHR16201:SF34
NCBI CDD KOG2913; Predicted membrane protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G41050 : PQ-loop repeat family protein / transmembrane family protein
RAP-DB (Rice) LOC_Os01g16170.1 : PQ loop repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035260 , Zm00025a024011
Brachypodium KQK03810
Barley -
Wheat TraesCS3A02G183600 , TraesCS3A02G183600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G063700 OsFBW2 - F-box domain and WD40 repeat containing protein, expressed -
2 Sobic.001G333200 RING zinc finger protein-like, putative, expressed -
3 Sobic.006G137400 - -
4 Sobic.002G380500 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12891: splicing factor, arginine/serine-rich 2
5 Sobic.005G036600 calmodulin-binding protein, putative, expressed -
6 Sobic.003G037700 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.003G117700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.003G390400 expressed protein -
9 Sobic.003G170100 - -
10 Sobic.005G110472 - -
11 Sobic.004G299000 expressed protein -
12 Sobic.002G228700 patatin, putative, expressed -
13 Sobic.003G201750 - -
14 Sobic.007G113800 early-responsive to dehydration protein-related, putative, expressed -
15 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
16 Sobic.007G225800 NOL1/NOP2/sun family protein, putative, expressed K15335: NSUN2, tRNA (cytosine34-C5)-methyltransferase
17 Sobic.002G142300 cycloartenol synthase, putative, expressed -
18 Sobic.006G082600 OsFBX133 - F-box domain containing protein, expressed K10295: F-box protein 9
19 Sobic.002G186000 CD2-binding protein-related, putative, expressed K13099: CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2
20 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic003G124700 Sobic003G124700 Sobic005G063700 Sobic005G063700 Sobic003G124700--Sobic005G063700 Sobic001G333200 Sobic001G333200 Sobic003G124700--Sobic001G333200 Sobic006G137400 Sobic006G137400 Sobic003G124700--Sobic006G137400 Sobic002G380500 Sobic002G380500 Sobic003G124700--Sobic002G380500 Sobic005G036600 Sobic005G036600 Sobic003G124700--Sobic005G036600 Sobic003G037700 Sobic003G037700 Sobic003G124700--Sobic003G037700 Sobic003G117700 Sobic003G117700 Sobic003G124700--Sobic003G117700 Sobic003G390400 Sobic003G390400 Sobic003G124700--Sobic003G390400 Sobic003G170100 Sobic003G170100 Sobic003G124700--Sobic003G170100 Sobic007G052900 Sobic007G052900 Sobic005G063700--Sobic007G052900 Sobic002G209600 Sobic002G209600 Sobic005G063700--Sobic002G209600 Sobic001G497200 Sobic001G497200 Sobic005G063700--Sobic001G497200 Sobic007G225800 Sobic007G225800 Sobic005G063700--Sobic007G225800 Sobic008G105900 Sobic008G105900 Sobic005G063700--Sobic008G105900 Sobic005G063700--Sobic003G390400 Sobic006G060200 Sobic006G060200 Sobic005G063700--Sobic006G060200 Sobic001G269300 Sobic001G269300 Sobic005G063700--Sobic001G269300 Sobic002G000700 Sobic002G000700 Sobic005G063700--Sobic002G000700 Sobic002G262600 Sobic002G262600 Sobic001G333200--Sobic002G262600 Sobic001G107500 Sobic001G107500 Sobic001G333200--Sobic001G107500 Sobic007G160600 Sobic007G160600 Sobic001G333200--Sobic007G160600 Sobic006G088100 Sobic006G088100 Sobic001G333200--Sobic006G088100 Sobic002G350300 Sobic002G350300 Sobic001G333200--Sobic002G350300 Sobic003G345400 Sobic003G345400 Sobic001G333200--Sobic003G345400 Sobic003G220200 Sobic003G220200 Sobic001G333200--Sobic003G220200 Sobic007G037100 Sobic007G037100 Sobic001G333200--Sobic007G037100 Sobic006G082600 Sobic006G082600 Sobic001G333200--Sobic006G082600 Sobic010G124001 Sobic010G124001 Sobic006G137400--Sobic010G124001 Sobic007G211000 Sobic007G211000 Sobic006G137400--Sobic007G211000 Sobic004G112500 Sobic004G112500 Sobic006G137400--Sobic004G112500 Sobic004G208400 Sobic004G208400 Sobic006G137400--Sobic004G208400 Sobic008G041700 Sobic008G041700 Sobic006G137400--Sobic008G041700 Sobic004G065650 Sobic004G065650 Sobic006G137400--Sobic004G065650 Sobic004G188400 Sobic004G188400 Sobic006G137400--Sobic004G188400 Sobic003G201750 Sobic003G201750 Sobic006G137400--Sobic003G201750 Sobic006G137400--Sobic007G037100 Sobic008G173900 Sobic008G173900 Sobic002G380500--Sobic008G173900 Sobic002G380500--Sobic003G170100 Sobic001G420200 Sobic001G420200 Sobic002G380500--Sobic001G420200 Sobic002G144933 Sobic002G144933 Sobic002G380500--Sobic002G144933 Sobic002G157000 Sobic002G157000 Sobic002G380500--Sobic002G157000 Sobic003G200200 Sobic003G200200 Sobic002G380500--Sobic003G200200 Sobic003G108700 Sobic003G108700 Sobic002G380500--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G380500--Sobic003G268300 Sobic005G110472 Sobic005G110472 Sobic002G380500--Sobic005G110472 Sobic001G118100 Sobic001G118100 Sobic005G036600--Sobic001G118100 Sobic005G036600--Sobic001G269300 Sobic005G036600--Sobic007G052900 Sobic005G036600--Sobic006G060200 Sobic006G180432 Sobic006G180432 Sobic005G036600--Sobic006G180432 Sobic006G249050 Sobic006G249050 Sobic005G036600--Sobic006G249050 Sobic005G036600--Sobic004G065650 Sobic001G217700 Sobic001G217700 Sobic005G036600--Sobic001G217700 Sobic009G212700 Sobic009G212700 Sobic005G036600--Sobic009G212700 Sobic006G116100 Sobic006G116100 Sobic003G037700--Sobic006G116100 Sobic003G173950 Sobic003G173950 Sobic003G037700--Sobic003G173950 Sobic003G160000 Sobic003G160000 Sobic003G037700--Sobic003G160000 Sobic003G037700--Sobic003G170100 Sobic001G356500 Sobic001G356500 Sobic003G037700--Sobic001G356500 Sobic004G099800 Sobic004G099800 Sobic003G037700--Sobic004G099800 Sobic003G241200 Sobic003G241200 Sobic003G037700--Sobic003G241200 Sobic005G013200 Sobic005G013200 Sobic003G037700--Sobic005G013200 Sobic003G033200 Sobic003G033200 Sobic003G037700--Sobic003G033200 Sobic008G063000 Sobic008G063000 Sobic003G117700--Sobic008G063000 Sobic003G117700--Sobic003G241200 Sobic003G117700--Sobic003G220200 Sobic003G117700--Sobic003G200200 Sobic003G117700--Sobic003G173950 Sobic007G145200 Sobic007G145200 Sobic003G117700--Sobic007G145200 Sobic003G117700--Sobic003G170100 Sobic001G257300 Sobic001G257300 Sobic003G117700--Sobic001G257300 Sobic001G251700 Sobic001G251700 Sobic003G117700--Sobic001G251700 Sobic003G390400--Sobic005G110472 Sobic003G390400--Sobic003G170100 Sobic010G129200 Sobic010G129200 Sobic003G390400--Sobic010G129200 Sobic007G137900 Sobic007G137900 Sobic003G390400--Sobic007G137900 Sobic003G390400--Sobic001G251700 Sobic003G390400--Sobic002G157000 Sobic008G192500 Sobic008G192500 Sobic003G390400--Sobic008G192500 Sobic003G390400--Sobic002G144933 Sobic001G407200 Sobic001G407200 Sobic003G390400--Sobic001G407200 Sobic003G170100--Sobic005G110472 Sobic003G170100--Sobic003G268300 Sobic003G170100--Sobic003G200200 Sobic007G096600 Sobic007G096600 Sobic003G170100--Sobic007G096600 Sobic003G170100--Sobic002G144933 Sobic003G170100--Sobic002G157000 Sobic001G152320 Sobic001G152320 Sobic003G170100--Sobic001G152320 Sobic003G170100--Sobic007G137900 Sobic001G162300 Sobic001G162300 Sobic003G170100--Sobic001G162300
Octagon: transcription factors


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